RNA id: XM_043218684.1


Basic Information

Item Value
RNA id XM_043218684.1
length 1987
RNA type mRNA
GC content 0.51
exon number 3
gene id bmp2b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22001213 ~ 22006248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGAGCGAAGCTCTCCAATCAATGGCACAGACGCGACGCGCGCTGCACGCAGAGATGAGTCTCCAAGCAGTCTCCCAAAACTTCTGCTgatcacattttttttggtgaaaaatgACAGATCCAGGACTTTACGAACTCGAGCTGTCACTTTTGGAATTGCTGCTTTCTTTGACCTAAGCGTATGCGCACTTCATTAGAGTTTAGTGCAGTCTAGTTTGAAGTGTTGCTCAAGTATGAACAAGAAGAGGCGACCTGAGTTGCGGCGACTTTCTGTcgtgggataaaaaaaaaaacgcttgtGGATTAAAACACGACTTCATGAGGAATTTAAGAGACGACGGGAACGCAGACCGGCCGCAGCGCTTCCTCCTTCGGAACTGACTGATCATGGTCGCCGTGGTCCACGCTCTCACGGTGCTGTTGCTCGGTCAGGTGTTGCTGGGAGGTGCCGCTGGACTCGTTCCTGAGATCGACCAACGGAAATACAGTGATTCGGGGAGACACATGCCGGAGCGATCCGATATCAACTTCCTGAGCGAGTTTGAGCTACGGCTGCTCAACATGTTCGGACTGAAGCGAAGACCCACGCCGAGCAAATCGGCAGTGGTCCCTCAGTACATGCTGGACTTGTATTATATGCACTCTGAAAACGATGATCCAAACATCCGGCGCCCGAGGAGCACTATGGGAAAGCATGTGGAGCGGGCAGCCAGCAGAGCCAACACAATACGAAGCTTTCATCACGAAGAGGCTTTCGAGGCACTGTCCAGCCTGAAAGGAAAAACAACGCAGCAGTTTTTCTTCAACCTTACCTCCGTTCCTGCTGAGGAGCTGATCACGGCCGCAGAGCTGCGCATTTTCAGGGACCAGGTTCTCGGTGAGGCTGGTACGAGTGGCTTCCATCGAATTAACATTTACGAGGTCTTCAGGCCAGCACTGGCCCCTTCCAAAGAGCCTCTTACCAGACTTCTTGACACCCGTCTGGTGCAGGACTCTCACACGCGTTGGGAGAGCTTCGACGTGGGCTCGGCCGTGGCTCGCTGGGCTCGCGAATCCCAGCATAACCATGGCCTCCTGGTGGAGGTGCTCCATCCCGAGGAGTCGGAAGGATCCGTGGATGTCGAGAGGAACCGGAGGAGGCATGTGAGGGTCAGTCGCTCCCTTCATGCAGACGAGGACTCGTGGGCGCAGGCCCGCCCCCTGCTGGTGACCTACAGCCACGATGGTCAGGGCTCTGCGGTCCTGCATTCAAACCGAGAGAAGCGGCAGGCCCGGCAAAGGCCGAAGCAGCGCAGGAAGCAGCGCACAAACTGCAGGCGGCACGCTCTCTACGTGGACTTCAGCGACGTGGGCTGGAATGAGTGGATCGTGGCGCCGCCGGGCTACCATGCTTTCTACTGCCACGGAGAGTGTCCCTTCCCGCTGTCAGACCACCTGAACTCCACCAATCATGCTATCGTCCAGACGCTGGTGAACTCAGTCAATTCCAATATACCCAGAGCGTGCTGCGTCCCGACGGAGCTCAGTCCCATATCACTGCTGTACCTGGACGAGTACGAGAAAGTCATTCTCAAAAACTACCAGGACATGGTGGTGGAGGGCTGCGGGTGCCGATGAGATCTACCCAAtgaagacttttatttatacaaaaaggACGTTCAAAGAGCTATTTTggaggaagaaaagaaatatatatgaatatatttatgttgactgaaaaagaaaatgggaaaataaatattttaatgagagTGCTTGCTTTTTCCATTGGCtttgaagatgttttttttcctgtcccatgaacatttcaaaatgagtgCAATTGCACATGAAGTATAATGCTCAGAtttttatgatgtatttattgcataaccactttatttgtaaatgatgtgtatttatcatgaaaaaaaatatatgatctTCATTCAATGTGCATCTGGGAATACATTAtttgaaaccaaaaaataaaccaTGGATGATGAA

Function

GO:

id name namespace
GO:0001710 mesodermal cell fate commitment biological_process
GO:0060876 semicircular canal formation biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0045168 cell-cell signaling involved in cell fate commitment biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0040007 growth biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0060030 dorsal convergence biological_process
GO:0030903 notochord development biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208019 lncRNA downstream 31064 21950746 ~ 21970149 (-) False LOC122325423
TU208018 lncRNA downstream 31064 21967344 ~ 21970149 (-) True LOC122325423
TU208017 lncRNA downstream 31210 21967344 ~ 21970003 (-) False LOC122325423
XR_006247298.1 lncRNA downstream 31841 21967399 ~ 21969372 (-) False LOC122325423
XR_006247297.1 lncRNA downstream 31842 21967399 ~ 21969371 (-) False LOC122325423
TU208063 lncRNA upstream 33317 22039565 ~ 22041112 (-) True G140940
XR_006247257.1 lncRNA upstream 55324 22061572 ~ 22067308 (-) False LOC122325129
XR_006247256.1 lncRNA upstream 55324 22061572 ~ 22067308 (-) True LOC122325129
TU208092 lncRNA upstream 75276 22081524 ~ 22082617 (-) True G140964
TU208095 lncRNA upstream 91658 22097906 ~ 22098339 (-) True G140967
XM_043220548.1 mRNA downstream 64754 21935374 ~ 21936459 (-) True LOC122325511
XM_043220547.1 mRNA downstream 82409 21917818 ~ 21918804 (-) True taar11
XM_043220496.1 mRNA downstream 113690 21886498 ~ 21887523 (-) True LOC122325446
XM_043220499.1 mRNA downstream 116785 21883406 ~ 21884428 (-) True taar13a
XM_043220485.1 mRNA downstream 121034 21879154 ~ 21880179 (-) True LOC122325436
XM_043220027.1 mRNA upstream 46809 22053057 ~ 22058826 (-) True chgb
XM_043219962.1 mRNA upstream 85824 22092072 ~ 22097205 (-) True gzf1
XM_043219319.1 mRNA upstream 388587 22394835 ~ 22470270 (-) False atad2b
XM_043219318.1 mRNA upstream 388587 22394835 ~ 22470270 (-) True atad2b
XM_043219320.1 mRNA upstream 397764 22404012 ~ 22470270 (-) False atad2b
TU207994 other downstream 154296 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 159745 21841113 ~ 21841468 (-) True G140883
TU207950 other downstream 260209 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 488860 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 722472 21198710 ~ 21278741 (-) True G140616
TU208103 other upstream 106354 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 108790 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 109459 22115707 ~ 22115789 (-) True trnal-uaa_37
XR_006247154.1 other upstream 1382921 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 1384217 23390465 ~ 23401391 (-) False mcm9

Expression Profile