RNA id: XM_043218701.1


Basic Information

Item Value
RNA id XM_043218701.1
length 1814
RNA type mRNA
GC content 0.53
exon number 4
gene id vgll2a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23142907 ~ 23146976 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAACATAAAAGCTGCTCAGTGCGCTTCAGCCGGACTCGACGCGGAGCTTCATTTTCCGTCTGCGCACGCCAAGACAGCgctttatttcaaatgaagcGTCCTTTCATCCCGCTAATAAGTTTTTATACGTGATATAACAGCTGTCTTCGCCATGAGCTGCTTGGATGTCATGTATCAAGTTTATGGTCCACCTCAGCCTTATTTTGCCGCAGcatacacaccatatcaccatcAGAAACTGGCGTTTTACTCTAAAATGCAAGAATCCCCAGAAACAGTGAGCGGAAGCAGCTCTTCTTTTTCGAACATCACCGGGCCACCTATAAAAGAGGAGGACTGCGCCCGGGAGAAAGATCACCCGCCGGAGGCTGAGTACATCAGCTCCAGATGTGTGCTATTCACGTACTTTCAAGGGGACATCAGTTCGGTGGTGGACGAACATTTTAGTCGGGCTTTGAGTCAGTCCAGTAGTTATGCACCTGGATCCACCAACAGCAAGACCCCAAGAGGTACATCGTCCTGGAGAGACGGATCATTCCCTATGAGCCAGAGAAGCTTCCCTCCTTCTTTCTGGAACAGTGCGTATCAGCCGTCGGTCACAGCGTCCCTCAGCAGCGCCCTGGGTTCCTCTCACACAGACCTCCCCTTCCCAGCGGACCCGTACTCCACCGCATCTCTACACAGCCACCTTCACCAAGCCACCCCGGAGCCCTGGCACCCGTCTCACCACCATCACCCTTACTCGCTCAGCGGAGCCATCGGCACCCAGGGGTCCGCTTACCCCCGGCCCTCCGTGCACGACATGTACGGAACGCACTTTGACCCCCGTTACGGCTCTCTGCTCGTGCCTTCGGTGCGGCCCCATAGACTTCCTCCCGCCACGGTCCCCGCGCCGGGAGCCTCGCCGTGCGATATCAGCAAGAGCGAGCCGGGCGGCTCAGCGTGGACCGGAGCTTTCACAGCGGCGAGCTCTGATATGAGCCTGAACATGGATACAGGTCTACAGAGCCAGGATAAAAGCAAGGACTTGTACTGGTTTTAGTGCCCTGCGACCGCTTCTTTCTCCGCTGGCTTGTCTTTCTCTGGCTTTTTCTGTAACAGATTCTCGTCTCACTTGCAGCTCGGCGCTACACCCTCTGCGGCGGGACCATCCTGAGCTGAACCCTTCGGCTGAGCGCAAAACTCTCGATAGAGAAAAGACTGTAAAGAGGAGCGAGCGCGCCGTAGCGGGTGTGCGACCGCTCTCGCCCCCCCCCCTTCCCCAACCGAACGGACCCAAAacgagatttttttaaaaaaaaggacaaacgTTGCTTCGAGGGGACGAGCTTTGCAGGAAAGACGGGAGTTTCCGATGCGAGAGCAGCATTCCCGATCATCTCTGAAGACGGAGAGCGGCTATTTGAAGCCACTTGACTCTATCTATATTGCTTTCGGCACCTGTCACCGACAACTGTTGTGGAACTTAGACCGAGCGAGCGCCCCCCGGATTTCATTAAACAGGCGTTTCGTTGTATCTGGACACACGGCGAAAGGGAACAACTGGTTTGGTTTTTCATTCGTTTCTGAGGAGTGGTGTGAGTTCAACCGGAAGTGGATACGAACACCATTAAgctgtactgtatatactttACGTGTCTTAGTGTGTCCAGCAGCATGACAGAAATACTGATTCTTTCATTTGTacttctatttcttttttttaacaaccaCTTCCAGTCACCGTCAGCCTGGGGTGACGTCTCACCACGGTGTATTTGAATGTACGACATGTAATATATTACCTTCTAAAGTATTTTTCCAGTGCATTGAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208355 lncRNA upstream 69242 23066587 ~ 23073665 (+) True G141168
TU208287 lncRNA upstream 219779 22920693 ~ 22923128 (+) True G141121
TU208271 lncRNA upstream 282580 22858989 ~ 22860327 (+) False si:ch211-203k16.3
TU208266 lncRNA upstream 397121 22745420 ~ 22745786 (+) False matn3a
TU208246 lncRNA upstream 585405 22557229 ~ 22557502 (+) True G141091
XR_006247220.1 lncRNA downstream 47645 23194621 ~ 23206082 (+) False LOC122324747
XR_006247221.1 lncRNA downstream 47645 23194621 ~ 23206082 (+) False LOC122324747
TU208384 lncRNA downstream 48015 23194991 ~ 23196194 (+) False LOC122324747
XR_006247218.1 lncRNA downstream 48177 23195153 ~ 23206082 (+) True LOC122324747
XR_006247219.1 lncRNA downstream 48177 23195153 ~ 23206082 (+) False LOC122324747
XM_043218620.1 mRNA upstream 23771 23109345 ~ 23119136 (+) False rfx6
XM_043218619.1 mRNA upstream 23771 23109966 ~ 23119136 (+) True rfx6
XM_043219202.1 mRNA upstream 80631 23055116 ~ 23062276 (+) True plg
XM_043219206.1 mRNA upstream 89853 23050263 ~ 23053054 (+) True gpr31
XM_043219203.1 mRNA upstream 100528 23039822 ~ 23042379 (+) True ttll2
XM_043220324.1 mRNA downstream 17469 23164445 ~ 23192385 (+) True dcbld1
XM_043219390.1 mRNA downstream 63814 23210790 ~ 23214047 (+) True LOC122324745
XM_043220397.1 mRNA downstream 68100 23215076 ~ 23222915 (+) False nus1
XM_043220396.1 mRNA downstream 68102 23215078 ~ 23222915 (+) True nus1
XM_043220395.1 mRNA downstream 85408 23232384 ~ 23311466 (+) True slc35f1
unassigned_transcript_2513 other upstream 42619 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 625232 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 666133 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 1298206 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 1944288 21168775 ~ 21198619 (+) False ipo13b
TU208810 other downstream 925895 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 925895 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 925895 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1293267 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 1821904 24968880 ~ 24992667 (+) False LOC122325234

Expression Profile