RNA id: XM_043218776.1


Basic Information

Item Value
RNA id XM_043218776.1
length 1792
RNA type mRNA
GC content 0.40
exon number 8
gene id pbk
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20301406 ~ 20304874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTAGCTTTACGTACGTTTGACGTCAAGCTAACCGGTGCTTTTTGAATCCGAGCGCGTATTTCAGCTTCTCTGAAGTTcttatataatttttagagAAATGGAGGCCAACAAAGAATCACCTAGTGCCTTTAAAACGCCTTGCAAGCCTGCAAAAATGAGAAGCCCAGTCAGTTCATGTGGAACCCCAGTCACTATTCCTGCTTCTCCCTTCATGAAGAAGCTCGGCTGTGGGACTGGAGTCAATGTCTATCTCATGAACAGGATGGGTAAGCACACTCACTCACCATGGGCCATTAAGAAGATCAATAGCAAATGTGTAAAAAGTCAAATGACAGTTTATCAGAAGCGTCTGTGCGAGGAGGCAAAGATCTTAAAAGACCTGCACCACCCCAACATTGTTGgtTTCAGAGCTTTTACCACTGCAAAGGATGGCTCTAAGTGTTTGGCGATGGAGTTTGGCGGAGAGCAGTCTCTGAATGACCTCATTgagaagaggagagaggagggTCTACAGGCATTTCCAGTGGCCACTATTGAAAACGTGGCTCTTCATGTGGCACGTGGTTTACAGtatTTGCACaatgagaaaaagcttttgcaTGGAGACATGAAGTCATGCAACGTTGTCGTCAAGGGCGACTTTGAAAGCATCAAAATCTGTGATGTTGGTGTGTCACTGCCACTGGACGAAAACATGCAGGTGAATGATCCAAAAGCCCACTATATAGGGACAGAGCCGTGGAAGCCTAAGGAAGCTTTGGAGGATGGAGTTATCACAGACAAAGCTGATATATTTGCGTATGGACTCACTCTGTGGGAGATGATGACACTTTCTGTTCCTCACCTGGAGATACTGGACACTGAGGGGGACGATGACGATTGTGATGATACCTTCGATGAGGATGATTTTGATGAAGATGCGTATTATGAGAGACTGGGAACTCGGCCTGCTTTGGACGCAGACACTCTTGGAGGGGCTTATCAGAGGATGGTGGAGCTCTTCTGTCTGTGTACAGAGGAAGACCCTCATAAACGACCTTCTGCAGCTCACATAGTTCAGGTGCTGGAATCAAACACCCAGCTTTGTGACAAAAGCAGTGAGGTCATTGtaattgattaaatgtttaCTGTTCGTTTCCTGTCAAATATACTGTTGGGTCTGGTTGCTTTTCTGTCTATAGTCTTTCTGTCTGCGTTTTCACATTCCTAGTACTTTTATGCTGTCGtgttatgtatgtttttatgtactCTATTGACTTTCAGTGATTCTAAATACAGTAGTTGcagtgcaatttatttaaattgattatttaaattgtcatttagcagacacttttatccaaatgaggacaatggaagcaatcaaaacaaaagaacGTGCTGTAACAAGTCTCAGTTATCATAACgcagtaaggttttttttatacgtTGTATAATAAAGGAGAATAGCAAGCTAGTGTTAGAGgcctttttttgcttttgttaattgtataagtaaaattaaaatgaactatgGTCTTAGCAAAATCAGCACACACATCTGccttatgaattattttaattttacaatctTTCTGGAtgggaattatttttttttatgacaaaggGCAAGTCCTTactataataaaagtaatttatgtaACATGGAAATATCCACCTGAAGTTAATATGCCCTCTTGTGCCATGTGATATATTCTAAactaagtgtttttaaaattgtgttgcTATGGATGCATATGTTATTGCATGGGCCagttgtactgtaaaatattaaatgttaaccaacagaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08865 PBK; PDZ-binding kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207243 lncRNA downstream 14411 20286480 ~ 20286995 (-) True G140328
TU207223 lncRNA downstream 33140 20266668 ~ 20268266 (-) False G140315
TU207301 lncRNA upstream 105755 20410629 ~ 20411861 (-) False nkain2
TU207356 lncRNA upstream 321781 20626655 ~ 20626863 (-) True G140413
TU207360 lncRNA upstream 329436 20634310 ~ 20658357 (-) False pkib
TU207404 lncRNA upstream 431714 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 485032 20789906 ~ 20791701 (-) False G140449
XM_043220219.1 mRNA downstream 5247 20293294 ~ 20296159 (-) True ccdc25
XM_043219893.1 mRNA downstream 37556 20258253 ~ 20263850 (-) True clu
XM_043219892.1 mRNA downstream 59095 20230975 ~ 20242311 (-) True LOC122325054
XM_043219894.1 mRNA downstream 71585 20173548 ~ 20229821 (-) True rcan2
XM_043219895.1 mRNA downstream 105933 20173548 ~ 20195473 (-) False rcan2
XM_043218870.1 mRNA upstream 1765 20306639 ~ 20311285 (-) True LOC122324455
XM_043220350.1 mRNA upstream 6550 20311424 ~ 20328698 (-) True pex7
XM_043218711.1 mRNA upstream 25816 20330690 ~ 20334913 (-) True hey2
XM_043219209.1 mRNA upstream 68311 20373185 ~ 20407062 (-) False tpd52l1
XM_043219207.1 mRNA upstream 68336 20373210 ~ 20407062 (-) True tpd52l1
TU207179 other downstream 238429 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 241803 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 242907 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 686204 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 997438 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 668530 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 893836 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 1204755 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1427672 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1536239 21841113 ~ 21841468 (-) True G140883

Expression Profile