RNA id: XM_043218820.1


Basic Information

Item Value
RNA id XM_043218820.1
length 3183
RNA type mRNA
GC content 0.42
exon number 11
gene id dcun1d4
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11692782 ~ 11704023 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCAAGTAAGTACAATAGTACGTTTTCACTGTTATTCGTATTTTGTCGACCTGTGATGGCAATTAGGAACTTGCTGCACCCTGACAAGTCGTCGTGACTTCTCTTAAGATGTATGATTCGCTGTATTGACGCATTTTATTTCCAGCTGAACTCTCATTTGTCCACACTGGCCAGTATCCACAAGATCTACCACACCCTGCACAGGCTGAACCTGACAGAAGACGTCGGCCCAGAGACTCACAGTACAGCCTGCTGCTCCAGAGCCATGCCCCCCAGGAAAAAGAGGAGACCCACTGCTGGAGATGACCTGTCTGCTAAGAAGAGCCGGCAGGATAATGTTTACAGAAAACAGGAGACATTGCAAATCCAGGAAGCCGAAGCTTTTTCTAGCAAGAGATGCCTAGAATGGTTCTACGAATACGCAGGGTGCGATGATGTTGTTGGACCGGAGGGGATGGAGAAATTCTGTGAAGACATTGGAGTGGAGCcagaaaatGTAGTGATGTTGGTATTGGCCTGGAAGCTTGATGCCCAGAGTATGGGTTACTTCACTTTACAGGAGTGGCTCAAGGGAATGGGCTCATTGCAATGTGACTCTACTGAAAAACTCAGGAACTCTCTAGACTACCTGAGGTCTGTCCTCAATGATGCCACCAGTTTCAAGCTCATTTACCGATATGCCTTCGACTTTGCCAGGGAGAAGGATCAGAGGAGTTTAGACTTGAATACTGCCAAGTGCATGCTGGGACTTCTGCTTGGGAAGACCTGGCCATTGTTTCCAGTGTTTAACCAGTTTCtagaaCAATCTAAGTATAAGGTTATAAATAAAGATCAATGGTGCAATGTTCTAGAATTCAGTAGGACTATCAACCTTGATCTCAGTAACTACGATGAGGACGGGGCCTGGCCAGTGCTTTTGGACGAGTTCGTGGAGTGGTATAAAGACAGAGAGATGTCGTAGCGACAGCTTCCCCGCGCCTACCACCATCACCAACTAGATAGACCAACTAATCGCCAACAATCACCATGACAATGACGACAGAAACGGCTTTGAAACAAACATCTAGAAAACAAAGTACAAATCAAAACTGAAGTGTTTGGGACAGACTGATGGTGGCCCCTGGCACTGAGGGCtcgagtgtgtgagtgtttgcaTAGAATGTAATTATCAATGCACATGTTTGTATGTCGCCCTTTTAGCCGGGGCCATAGGAGGGTCACTGGTGGTTGCGTGTTGGAGAATCAGCACCTCACCGACTCCACCTAATGTCCCCCATAGCCCacaatgcattgtgggtaagCACACGGCCAGTCTTGGTGCCGCCTTCCCACCCCACTGTGATGTTTCATATTGCTGTGAATGTTATAATAGGCTCTTATAAGGAGGATGAATTTGGATTCTCCAAAAGGCAGGGTAGGTTAAAACTCCCATACTGTCTGAAGTTTAGGTAATTTAGACctgaaaggaaaggaaaaagaagaacCTACTTGGCTTTTTACTGAAGGTCGGTGACTTATTGCTAAGGTTCAAAATGGAAATAGCTTACAGTGTCGCTCTGCTGATGTGGTCCAAACACTGTTTACTAAGGTTTTTATGTTGGAGGATGATGACAGTCAGGGCATGTTACCATAGATACACAGCGACCTTTGccataagttttatttttaccagTCTCACTGCACTTGGATGCCATTTAATAAAGCGCATCACATGCAAGAGTGTCAAAGACATTCTGCTGTAAGTACTTCCAGTGGTGGTCTTATATCAGCATCCCTTTCACCACTTAACATTCTTGATTTTGATTATGAGCTCAACAAGAACAGCTTTACTGTTCACAACATGAAGAACAGTGGGTTATACTTATCGTGAGCGTAGAGCCCAGTATCTTTTTCCTGGCTCACTTGACCATTGTGTATTCGCACTGCAATGGCAAGATGTGGCCATCTTGTAGAGGAATGTGAGCAGGTTAAAGTGACTGGAATGCATTCACTATATCATTTGATTCCTTAGCAATGTAACTATACTGTGCATGTCATGTTAAAATGACAGGACGTGGATCTAAGGGTGAGATGACGAGAGAAAGCTGTTAAAGTGCACTTTTGATTTCTGTGATGAAttgccacaaaaatataaaaacaggtaTCCTGCCCTAAACACTGACACTCCTTTGGCCACATCCTCTTCCACAGATCTTGTGGTCAAATGTGATCACCTTAACCCATAGTGACCAATGCCTAGCAACTATTTAACGTTCTAGTTATGTTTGTAAAACTGTTGAGTTTTGTCTATGGCTGTGGCGTGAAGCTAACTTGTCAtctgaacaagaaaaaaaaatgcatgcatgcattctgCAATTAGAGCCGTCTTTGTGAATgaatgagatttttatttttttttgtacatttattttaaattttattttattttttggctcttgtttatttttttgtacaggtATTtgtagaagtgtttttttgtgcttaatTTGGGTATCCGCGGTCATGCAGTCTTAACGCTTTATGAAAAACATGATTGTGTGATGGTATTTAGAGCTTAAACACACTTGTAACCTCATCTGTTGAGATGTTCTGCTCTGCATTGCCTTCTCCACCATCTCCACCAAGTGCTAAACTACCATGTACATGAGTGACTGCAGCATTTCTGTATATCTGCAATTTCATGTAAACATACTAATTTTATGTTCGTCTCATATGGATGCAGACAAAATCgatattaactttattaaagcTTATTTAGGGAAtcaaaagttgttgttttttatctGGTTACAAGAAGGCATTTtagttatgttatgttttttaaaaaatgaaggtTGCTTACCATAAATTATTTATCAAGTTTTCACCCAGCATCTAAGATGCCAACAGTCTATGTATGCTGTGCATGCTGGCCAGAATCCATTAGAAAATTGTCTACAGACACTTGTTATAATCCCATTCATCTGCACCTGTTTGTGCCTGAGGGAAATGgtggttttaaaatgatttcaacaGACGTTCCCTGTGTTGTTATGACTGTTGCTTTTGTTGGGGGAGTATGTAATGCAGAGGGCTGAGCATTCTCATCtgactgtatatatgtatggatgtgtgtgtatatgtgtttgttttcactgtAACCTCTCtacattcaatatatataaaGGGGTTTATTAACGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247149.1 lncRNA downstream 61688 11623593 ~ 11631094 (-) False LOC122324332
XR_006247148.1 lncRNA downstream 61688 11623593 ~ 11631094 (-) False LOC122324332
XR_006247147.1 lncRNA downstream 61689 11623593 ~ 11631093 (-) False LOC122324332
XR_006247144.1 lncRNA downstream 61690 11628616 ~ 11631092 (-) False LOC122324332
XR_006247146.1 lncRNA downstream 61692 11623593 ~ 11631090 (-) True LOC122324332
TU203474 lncRNA upstream 13300 11717238 ~ 11751172 (-) True G137779
TU203475 lncRNA upstream 13300 11717238 ~ 11726234 (-) False G137779
TU203514 lncRNA upstream 67331 11771269 ~ 11771660 (-) True G137812
TU203482 lncRNA upstream 88612 11792550 ~ 11797951 (-) True G137784
TU203524 lncRNA upstream 132168 11836106 ~ 11836716 (-) True G137821
XM_043218910.1 mRNA downstream 16131 11670188 ~ 11676651 (-) False spata18
XM_043218909.1 mRNA downstream 16134 11669140 ~ 11676648 (-) True spata18
XM_043220584.1 mRNA downstream 85029 11604630 ~ 11607753 (-) True rasl11b
XM_043220158.1 mRNA downstream 186455 11484137 ~ 11506327 (-) True fip1l1a
XM_043220026.1 mRNA downstream 324292 11366923 ~ 11368490 (-) True gsx2
XM_043218824.1 mRNA upstream 9004 11712942 ~ 11716297 (-) True ociad1
XM_043219028.1 mRNA upstream 91460 11795398 ~ 11796899 (-) True zar1
XM_043219026.1 mRNA upstream 94082 11798020 ~ 11801524 (-) True slc10a4
XM_043219022.1 mRNA upstream 100736 11804674 ~ 11822835 (-) True slain2
XM_043219024.1 mRNA upstream 100736 11804674 ~ 11822832 (-) False slain2
TU203468 other downstream 9464 11682405 ~ 11683318 (-) True G137773
XR_006247366.1 other downstream 62421 11630241 ~ 11630361 (-) True LOC122325627
XR_006247365.1 other downstream 62941 11629720 ~ 11629841 (-) True LOC122325626
XR_006247367.1 other downstream 63533 11629128 ~ 11629249 (-) True LOC122325628
XR_006247255.1 other downstream 324292 11366923 ~ 11368490 (-) False gsx2
TU203734 other upstream 514825 12218763 ~ 12219639 (-) True G137967
TU203715 other upstream 518872 12222810 ~ 12224270 (-) True G137949
TU203701 other upstream 542284 12246222 ~ 12247010 (-) False mdn1
XR_006247291.1 other upstream 1721537 13425475 ~ 13436351 (-) False cracd
TU204189 other upstream 1960568 13664506 ~ 13692007 (-) True G138285

Expression Profile