RNA id: XM_043218824.1


Basic Information

Item Value
RNA id XM_043218824.1
length 1543
RNA type mRNA
GC content 0.44
exon number 8
gene id ociad1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11712942 ~ 11716297 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAACTCCTGCACTTCCGGGTTAGTGTTATTCGCTGATAAGAGTCGACTGGAGGTCATGGAATAAAGTGTGTCTCTGGACTTGTTGACATGTAATCCGCGTAGTCTCATGACtactgcaaaaacattattgtttgtttaatcGCGCGTTGCTTCTTGACTCAGTCATGTCGCAGGCTTCGTCTGGATTCACTCCGGCCGCTCAGGTCCCGCAAGGGTCTAGTAAGGGTCCTTTTAATGTCTGGGTTGCTCCCACTGAAGAAGAGAGTCGTGTCCTCAAACAGTGTAATTCAGAAAGCTTCTGGTACAGATCCTTGCCGTGTTCTGCCATTGCAATTGCAGCCACTCAGGTGATGGTATCAAGACGAATCCTTACTCCCTCGCCCCGGTTTGGCTCTCTTCCCAAAGTTGTGTTTGCTGGCATGTTGGGATTCATTACTGGGAAAATGTCTTACATGAAGGTCTGTGAAGAAAAGTTTAAAACACTGGAGAACTCCCCGCTGGGAGAGGCGCTACGACAGAGGCGTCTGCGTCACATGCCTTCAGAgCCAAACCAGTCAGAGTTTGAGGATCCCGACCTATCCGAATCTCAACAGTCTGCTTCGAAGTCCGCTTTCCAGCCTTCGACAGAAGTCCGATCTGTGCCTGAGAACGACAGCAGTTACACCAGTGACTATCAGTACAGCAGTCCCTCGCAATCATACGACCCCACTCCTTTCAGTTCTGGATTTAGCGATTCTGGTCCCGTTAACATCAGGGACGGTCTTTCTTCTCAAGCTCCGCTCTATCCAGATGAGGACGTGCCCAAAAAGAAGCCGGTGTTGTACGAGGAACTGCGTAACAAGAATAGAGAGAGCTATGAGGTCACTCTGACGCAGAAAGCTGAAACGCTGGTAAAACCGCAAACAGTGGCACCAGTACCCAAGCAGGAAGttaaaaagaataaatatggAGATGCCTGGGACGAGTAATCAGCTGTGTGAGGAGCTGAAGATCTGAACACGGTGACTTCTGAGAAGTTGTCCCGACTCCCTCTGCCAGACCAAAAGCTGCAATCAAATGCTGAATGTACTTTAAGgagtaaaacacattttcatattttctttcaatGGCACATTTGTGGTTTGAAAACGAATGTTTCTCATTTTTCGACTTCTTGCTTAACGCGGACTCAcgataaatcattttaacaaactatcagtgtttttattgattggaAAATTCTGGCCAGATGTGCTTgagattttgtaaataaactttGTATCATTACCAATAGATATGGGGTTGTTTCATATAATCccagaaaatatgtaaaaaaaaaacaaaacaaaaaggcatcAGGTTTGATTCTCAACTGGAAATGTAGTCCATCACAACGTTAAAAACTGTGCACAGGTGACAATTACAACAGTATGAGAGTAGATGTGTTATCAGTCTTCTGTGCTGGAGATAAAGAGATGCTCTTTAAattcctaaaaatatatatacacatttaaatgttcagacatttcaaataaaggcGTAATTTATTTACTGCACAATGA

Function

GO:

id name namespace
GO:0005768 endosome cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247149.1 lncRNA downstream 81848 11623593 ~ 11631094 (-) False LOC122324332
XR_006247148.1 lncRNA downstream 81848 11623593 ~ 11631094 (-) False LOC122324332
XR_006247147.1 lncRNA downstream 81849 11623593 ~ 11631093 (-) False LOC122324332
XR_006247144.1 lncRNA downstream 81850 11628616 ~ 11631092 (-) False LOC122324332
XR_006247146.1 lncRNA downstream 81852 11623593 ~ 11631090 (-) True LOC122324332
TU203474 lncRNA upstream 941 11717238 ~ 11751172 (-) True G137779
TU203475 lncRNA upstream 941 11717238 ~ 11726234 (-) False G137779
TU203514 lncRNA upstream 54972 11771269 ~ 11771660 (-) True G137812
TU203482 lncRNA upstream 76253 11792550 ~ 11797951 (-) True G137784
TU203524 lncRNA upstream 119809 11836106 ~ 11836716 (-) True G137821
XM_043218819.1 mRNA downstream 8919 11692782 ~ 11704023 (-) False dcun1d4
XM_043218818.1 mRNA downstream 8958 11692782 ~ 11703984 (-) False dcun1d4
XM_043218820.1 mRNA downstream 9004 11692782 ~ 11703938 (-) False dcun1d4
XM_043218823.1 mRNA downstream 9162 11692782 ~ 11703780 (-) True dcun1d4
XM_043218821.1 mRNA downstream 9163 11692782 ~ 11703779 (-) False dcun1d4
XM_043219028.1 mRNA upstream 79101 11795398 ~ 11796899 (-) True zar1
XM_043219026.1 mRNA upstream 81723 11798020 ~ 11801524 (-) True slc10a4
XM_043219022.1 mRNA upstream 88377 11804674 ~ 11822835 (-) True slain2
XM_043219024.1 mRNA upstream 88377 11804674 ~ 11822832 (-) False slain2
XM_043219023.1 mRNA upstream 88377 11804674 ~ 11822825 (-) False slain2
TU203468 other downstream 29624 11682405 ~ 11683318 (-) True G137773
XR_006247366.1 other downstream 82581 11630241 ~ 11630361 (-) True LOC122325627
XR_006247365.1 other downstream 83101 11629720 ~ 11629841 (-) True LOC122325626
XR_006247367.1 other downstream 83693 11629128 ~ 11629249 (-) True LOC122325628
XR_006247255.1 other downstream 344452 11366923 ~ 11368490 (-) False gsx2
TU203734 other upstream 502466 12218763 ~ 12219639 (-) True G137967
TU203715 other upstream 506513 12222810 ~ 12224270 (-) True G137949
TU203701 other upstream 529925 12246222 ~ 12247010 (-) False mdn1
XR_006247291.1 other upstream 1709178 13425475 ~ 13436351 (-) False cracd
TU204189 other upstream 1948209 13664506 ~ 13692007 (-) True G138285

Expression Profile