RNA id: XM_043218838.1


Basic Information

Item Value
RNA id XM_043218838.1
length 2746
RNA type mRNA
GC content 0.47
exon number 9
gene id nr2e1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16984344 ~ 16991803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAGTCACTCACCAAGGCTCCGGGGCTGAGACGCTCATGTTGTACTTTTTAAGCTGGCGTTGAGCGGTACAGTGCTAGCTCGGGCTCCAGCGTTTCTCCATTAGTTGCATCAAGTTTCCGCGGCGCCGAGAGACCGGGGACCGGTTTGGGCATACGCTGTTTGCGGCGCTGCATCCATCGCGTCAGTCAACGGTCTGGATTCTAATTTGCTGAAACACAAGAGGAGCGACTCGGACACAATCAAAAGAAAACTCCAACGGAAAGCTGAGGACCAGCCGGCCGCCGCAAACCGGATGCTACACTTGtgcttgtaatttaaaaaaaaaaaaacgagtcaAAGCGCGTTAAGACTCCCCTGGGCCTGAAAAGTAAAAGTTTGAACGCGGTTTTCTTGGAGCAGAGGTCTTCAACATGAGCAAGCCCGCTGGTTCAACAAGTGGTTGTCTGGATATTTTAAACGTCAAATCCAGTCGGATTTTGGACATACCGTGCAAAGTGTGTGGAGACAGAAGTTCCGGAAAGCACTACGGTGTTTACGCGTGCGATGGTTGCTCGGGGTTTTTCAAGAGGAGTATAAGAAGAAACAGAACGTATGTCTGCAAATCTGGCACACAGggCGGCTGTCCTGTAGACAAGACGCACAGAAACCAGTGCCGCGCCTGTCGCTTGAAAAAGTGTCTAGAAGTTAATATGAATAAAGATGCCGTGCAGCACGAGAGAGGACCGAGGACTTCAACCATCCGAAAGCAGGTGGCACTGTATTTCCGAGGGCATAAAGAGGTGAACGGTTCGTCGACCCATTTCCCATCCACGTCTATCCCGGGGCCGCCGTTTTTCACCACAGTCACGCAGCTGGAGCCTCACAATCTGGAGTTAAACACGGTCACGAGCACACCGGAACGACAGGCCATTGTAGGGCTCGCCCAGCCCACACCGAAGTATCCTCATGAAGTTAGCGGCAATCCCATGTACCTGTATGAAGTGGCGACCGAGTCTGTGTGCGAGTCAGCGGCGCGCCTGCTCTTCATGAGCATTAAATGGGCCAAGAGCGTCCCGGCCTTCTCCACACTTCCTCTCCCGGACCAGTTGATCCTTTTAGAAGACGCTTGGCGGGAACTGTTCGTGTTGGGTATAGCGCAATGGGCCATTCCGGTGGACTCCAGCACCCTCCTAGCGGTTTCAGGAATGAACACGGAGAACACGGATTCCCAGAGGCTCAACAAAATTATCGCGGAGATCCAGGCGCTGCAGGAGGTCGTGACGCGCTTCCGCCAGTTAAGACTGGACGCCACGGAGTTCGCCTGCCTCAAGTGCATAGTCACCTTTAAAGCAGTTCCAACACACAGCGGTTCGGAACTGAGGAGCTTTCGCAACGCCAGCGCCATCGCCGCCCTTCAGGACGAAGCCCAGCTTACTCTAAACAGCTACATCCACACCAGGTATCCCACTCAGCCGTGTCGCTTCGGCAAACTGCTGCTGCTCCTGCCTGCTCTACGCTCGGTCGGTCCTTCCACCATCGAAGAGGTGTTCTTCAAAAAGACCATCGGAAACGTGCCCATCACGCGACTGCTCTCCGACATGTACAAATCCAGTGATATATGAGCTACCGtgagacagagaaaaagaaaacaaacgtATCTTTGACCTTGGCATTCGCATGGACGCTGGGACGCTGTGGATGATACCAGACACCCTAATGTGATACTTCACGCACTTGTTTGGAGAACAAAGCTCTACCAATGTCAAGACGTTATTACGCAGGgaaactataaaacaaacaaaagactgAATCTCTATCGTTCGAGCTTACTgcttagaaaagaaaagaaaaaaagtaaccaGTAATTTTCTAATTGATTTACttttaatctatttaagttCGTTTATGGAAGTAACTTAACAAGCTTAATCTGTTCTTGTTCTATCaagatttaaatacaaaattatctTAGTTTGTAGTCATATATTTGAATGGAGTGTCCGTGAGGTTATGTACAATCATTCATTTCAAAACGGGACGTTTTATTGTGTCCAATTGACCAAGTACCTTTATGACCAATGCTGTTTTTGATTTCAGCACCATTATCATCCATTTGTCCACGAGAACtttgaagaaaaccaaaaaaaaaaatatatataaaaaacaaacaaaccatgaGGTATGTCGCAGGGAAGTAGGTCGCTGTCCCTTTGACATAGTGCTGAAAACCAAAGGCCCGTGAGTCAGAACTGAAGAGCAAGATCATTCCTGTTTTACCTTCTAGCAGAAGCTCCAACTTTAATCAAAACACTTGAACCAGCTAATCAGGTTTACTTGAAACGTACACTGAAAGGTTGGAATTAATCTCtgcaggaaggcagcaggactgTGCATTACTGACTCGATGCATCACATAATTACCTACTGAAGTGACTGGGAGGCCACAGCACCCACACCCTGTGACCTTGACAGAAGATTAGGGTTCATAGGCAGGGCATCCTCTGGATACAGATCTGTCGGCATTGTGAGTTTTCTGTGCGCCCActctgaaaatgtaattttaaaaagttgtttctgCTCAATCCACGGTCCATGTCAGAGGTGGCCATTTTAAACCTTTGTTTGACTAGCTACTAACCCTGGAAAAGAGACACCGCGATCAGCACTTGGATTTGCTTTTGTAGTCTGTAAATACATTTCTCGTTGTACAGTGATAATTTTTGTGAAAGTTGTTCTAAGatattagaataaatattgaatattga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08545 NR2E1, TLX, tll; nuclear receptor subfamily 2 group E member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205444 lncRNA downstream 37804 16850554 ~ 16946540 (-) True G139145
TU205451 lncRNA downstream 87961 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA downstream 92884 16889939 ~ 16891460 (-) True G139148
TU205448 lncRNA downstream 124088 16859343 ~ 16860256 (-) True G139147
TU205435 lncRNA downstream 139176 16843218 ~ 16845168 (-) True G139139
XR_006247281.1 lncRNA upstream 51844 17043647 ~ 17116946 (-) True LOC122325296
TU205685 lncRNA upstream 132083 17123886 ~ 17124259 (-) True G139300
TU205686 lncRNA upstream 133020 17124823 ~ 17125248 (-) True G139301
TU205687 lncRNA upstream 133634 17125437 ~ 17125910 (-) True G139302
TU205702 lncRNA upstream 344204 17336007 ~ 17336320 (-) True G139317
XM_043219290.1 mRNA downstream 14303 16949429 ~ 16970041 (-) False afg1lb
XM_043219289.1 mRNA downstream 14303 16949429 ~ 16970041 (-) False afg1lb
XM_043219288.1 mRNA downstream 14303 16949429 ~ 16970041 (-) True afg1lb
XM_043219287.1 mRNA downstream 37166 16921638 ~ 16947178 (-) False foxo3b
XM_043219286.1 mRNA downstream 37166 16921638 ~ 16947178 (-) True foxo3b
XM_043219622.1 mRNA upstream 160540 17152343 ~ 17286892 (-) True nbas
XM_043219623.1 mRNA upstream 160540 17152343 ~ 17286886 (-) False nbas
XM_043219275.1 mRNA upstream 422664 17414467 ~ 17424811 (-) True smek1
XM_043219276.1 mRNA upstream 422964 17414767 ~ 17424810 (-) False smek1
XM_043220607.1 mRNA upstream 434539 17426342 ~ 17428123 (-) False erh
TU205287 other downstream 522128 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 617572 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 618877 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 621032 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 948091 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 355003 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 434065 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 818471 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1351669 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1414224 18406027 ~ 18446949 (-) False G139706

Expression Profile