RNA id: XM_043218861.1


Basic Information

Item Value
RNA id XM_043218861.1
length 3956
RNA type mRNA
GC content 0.44
exon number 10
gene id hmbox1b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20745202 ~ 20757734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCGCTCCGAGGCGTGCGGCGTGACGTCAGCGCGGCTGCTGTCAGTCAGACAAAgacagtcagtcagtcagtcagggcGAGTCTTCCTTACAACATCACATAAAATATCATCTTCATCGCCTGACAGAGCGCATTAAATGATCTGCTGCGCTGagattttgtgtattttcctCATTCCAGAATGTCTCACTACACAGATGAGCCACGCTTCACCATCGAACAGATTGACCTGCTGCAGAGACTGCGGCGCACAGGTATGACCAAACCCGAGATCGTGCACGCGCTGGACACCCTGGAGCGGCTCGACCGCGAGCACGGGGACAAGTTCGGCCGGCGCGGCCCGTCAGACTCCAACGCCACCAACAGCACCACCTCCAGCACTACACCCACCTCAAATAACACTAGCAATGCCACCATGGCGACCTCCTCCACCACTTCCACAGCAACGCAAACGCAGTTCCACGGTAATCATTCGCCGTCGCCCAGCAACAGTTACGCCACGTCTCCACCTGCCGTCTTACCCTCGCCAGTCTCTCTGGTTGCCATGGCGCAGAACGGTCGGGACGCTTTGGCGGCGACACCCAATGGGAAGCTGTCGCCAAACCGTTACCCAGTGAACAGTGCGGCGGCCGTGAGGTCGTATGGGCTGGAGGGGTCAGAGGAGGACCTGGATATAGATGACAAGGTGGAGGAGCTCATGAGGCGGGACAGCACCCTGGTGAAGGAGGAGATCAAAGCCTTTCTGGGCAACAGACGCATCTCACAGGCTGTGGTGGCTCAGGTCACAGGCATCAGTCAGAGCAGAATCTCTCACTGGCTCCTCCAGCAAGGCTCAGATCTCAGCGAACAGAAGAAACGAGCTTTCTATCGCTGGTATCAGCTGGAGAAGACAACGCCAGgcgCCACATTAAATATGCGCCCCACCCCTGTATCTCTGGATGAAATGGAGTGGCGTCAGACTCCGCCCCCCATAAGCTCCGCCCCTGGAAGCTTCCGTCTACGCAGAGGCAGCCGCTTCACCTGGAGGAAGGAATGTCTTGCTGTGATGGAGAGCTATTTCAGTGATAATCAGTATCCAGATGAAGCCAAACGAGAGGAAATCGCCAACGCCTGCAACGCTGTTATTCAGAAACCAGGAAAGAAGTTGTCTGACTTGGAAAGAGTCACATCATTGAAAGTCTACAACTGGTTTGCCAACCGACGCAAAGAGATCAAGAGGAGGGCCAATATCgGGTCTTTTTTCCAAGAAGCCACAATCTTGGAGAGTCACGGGATAGACGTGCAGAGCCCCGGAGGACACTCCAACAGCGACGACATCGACGCTAACGACTACAACGAGCAGGCTTGCGATGTTACCTACTTTGAAAAGAGAGGAGTGAACAGACCCTTCGGTTACTACCGTCTGGAGCCCACCTCACCAACACAGGATGACGCCGGCAATCACGCAGACCACCAGGACCCCATCTCTCTGGCTGTGGAGATGGCAGCTGTCAATCACAGCATCCTCGCCCTGTCCCGTCCGGGGGGCGTGGCCGGTGAAATCAAGACAGAGTCGCTGGATGACGACTGAGGGAGGATCGATGAGTGCGTGTGTGGACGTCTGCAGACGTGTTCATGGAGCAATGACCAAATCAACGCTCTGTCTCAAGCTTCTAGAATCCAATACCGCCTGCCACCGACACTCCTGCTGAAccactagacacacacacacacacacacactcttgacAGGAACTGATAAGTGGAAGGTCGTTCCACGATGTTCGGCCATCACCCGCGGCTCTTATTTAAGCCTCCCGAACCCTCGCTGACCCAAACCTCGTACCTCATTCCAGTAACTTGTATAATGTTCGATGTGCTTCCTGTCTGTGTGCTCCCTCATTCCCTCGTTCTCACAGATAAGCTAAAAGGCAGATGGTTTAGGAGAGAGGTGAGTCTCTGTGAATTTCTGCTCTGGATCCATGATCTTCTCCATTCCAACTACAGTTGCTCTCAGTTAACAGGTTTAACGTTCCTACTTTACTTTTGTGAGGGATTTCATTAAACAGCAATTGGGTGCatctcacagaaacacatttcaaGAACACATTTCACCacaaaattaaagtgaaattaatatattttgcattaaatattattttacagattttaaagcaaattgtccattacaaaaatattgaaaatatatatttaaatcgtATAACATTTACGATCTTATACTTACTGTATGCTGActtgaaaaacaataattaaaaaaaaaaaaaaaaaaagtcataaatgcTATGAttctatggaaaaaaaaaaaatcttcagaatgcaaaatgtaattttatattattttccttttgGTTTGTGGATGAAATTTAACCTggatatatagtaatatttatcCAATtgcattatactgtattttaatttgaattcaaaAGGGTGGGGAGGTGAACCATAAATATAATGAAACTTGAAAGATATGGTTACATAACCACCAAAGCGCAACTTATTCTGCGCAAAAGCTCAAGTCTCCTGGACTCTAAATGAACCTGCAAAGAGAGACTTCAGTCGGCAGACAGCaagctttctttattttcaacCGTGAAGTGTCCAGCATTACCCAAAGTCAGTTTGCATTAAAGCGCTATTCttatgtttctatttatttcgCTTTTCcgttttatttacatgcaaCGTTTTCACACAAAGTTTGAAGACCGAAGCATCCGCTTTCATACACCGGCGTGAAAAATCATTCCACTAAAATTTTGGCTCCAGTTGCCAGCAGTCAGAATTACCGCGTGCAAACTCCCACtaagctttattattattattattattgtgaaatgaCATCAAAATTTCACAGTGTTATTAACTGTTCACGAGAGACTGACTGATAAATGTTTGTTCTGCTGCCACAGAGCTTCGAGAGTCTGAACTCTCATCTAACATAAGCTTGGTTccaaaatgtagcttttttttaaattaaaggttcTAAAAGAACTTTATCCTCTCGCTGAGCTTTATTCACTGAAACGAGCGGAACGATTGATTCGTAGAGCCGTTCTTACATTCATGATCAAACCCGTAAGAATACTAACAGACATTGGTTCTGTCCGTGTCATGAATGAAGCCCAGTTTATGTATCCTTCCTCTATCTTCCTGTGTACAATTGATATTTATGAAATGACAATTTtcgtttaataataattcaagatTATTTTACACcgtttttatgttttacgtTCAGAGCAGTCTCCTGAAGCGTGTCTGATTCAGATCAAGCACCCCCTTCACtcaaggaattaaaaaaaaaaaccatgccacctttttttttttttttatactagaatttgttttacatttaaacattgcagcgatacacaaaaaaaggtcattttctaATGCTGTAATGTTCAAATGTGTTCAGATGTCCATGTATCTTGTCTTTGTACACATGACAGAATGTGCCAAACTGCAGTATGACGTCAAGTATTGACATTTACACGATCTCGAAGCGACATACAGATTCCACGAATGACTCGTTCTGTTGACTCAAGTGTTCGATTCCAGAGCAACGAACGTTTTTATTCTGTATCGTAACCCTGCTGGTTCAAAGGGGGTGCTTTTCATTTAGTTCCTCAGAGTGCATTTTCATACgtctataaacaaaaaaatctataggcTTATAAAAGcaactgtataaataaacagaagACAGTAACTATGAATTTAAAGATTGTTTGAATCAAATAATTCtatgatttcaaaacattctGTTGTGAATCATCTGTATCTCCCATTTAAGAATTTAGTGCCTTTTTTGGACAGTAGACTGTTCTGTAAGTATACTATAGTATATATGAACTTTTTGTAcagtttctttgtttaaaatgactttttttaaaacttgtgtttattttagtactttatcTTCTGGAAAATAAAGGTATATTGATGATCAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24885 HMBOX1; homeobox-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207360 lncRNA downstream 86845 20634310 ~ 20658357 (-) False pkib
TU207356 lncRNA downstream 118339 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 333341 20410629 ~ 20411861 (-) False nkain2
TU207243 lncRNA downstream 458207 20286480 ~ 20286995 (-) True G140328
TU207227 lncRNA downstream 476936 20266668 ~ 20268266 (-) False G140315
TU207403 lncRNA upstream 32172 20789906 ~ 20791701 (-) False G140449
XR_006247242.1 lncRNA upstream 234787 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 238632 20996366 ~ 20996681 (-) True G140522
XR_006247273.1 lncRNA upstream 288091 21045825 ~ 21049976 (-) True LOC122325251
TU207582 lncRNA upstream 325560 21083294 ~ 21083559 (-) True G140592
XM_043218860.1 mRNA downstream 27105 20706925 ~ 20718097 (-) True ints9
XM_043218859.1 mRNA downstream 27229 20706925 ~ 20717973 (-) False ints9
XM_043218599.1 mRNA downstream 64381 20674997 ~ 20680821 (-) True riox1
XM_043220479.1 mRNA downstream 72082 20661011 ~ 20673120 (-) True cpsf2
XM_043218760.1 mRNA downstream 86822 20634296 ~ 20658380 (-) True pkib
XM_043218874.1 mRNA upstream 187903 20945637 ~ 20964922 (-) False cd109
XM_043218873.1 mRNA upstream 187903 20945637 ~ 20964922 (-) True cd109
XM_043219753.1 mRNA upstream 210454 20968188 ~ 20975755 (-) True crnkl1
XM_043219541.1 mRNA upstream 322070 21079804 ~ 21082714 (-) True nkx2.4b
XM_043220497.1 mRNA upstream 331670 21089404 ~ 21091008 (-) True nkx2.2b
TU207179 other downstream 682225 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 685599 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 686703 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1130000 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1441234 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 215670 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 440976 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 751895 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 974812 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1083379 21841113 ~ 21841468 (-) True G140883

Expression Profile