RNA id: XM_043218874.1


Basic Information

Item Value
RNA id XM_043218874.1
length 5517
RNA type mRNA
GC content 0.45
exon number 33
gene id cd109
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20945637 ~ 20964922 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTAAAAGGATGTGCTGGTCTCAGTGGTTCAGTAACAGCTTTCACTGAAGCGTCACGCCGTAATGGAGTGGCTTCAGGTCTTTGGAGTCCTGGCGGGTTTATCACTCTGCAAAGGAACTCTAACCACGCCGAGCCCAGCTCACAGTCCCACCTATCTCATATCCGTCTCTCAAATTCTACACTGTGGTGTTCCGACCACTTTATCAGTCACCGTTCTGGCAGATTATCCCATCAAAGTCAAGGCTGAACTCTTCCATGAAAACAGGAGTTTGGCCCAAACAGAGAGCACCATCCCAGGAGgcTCTACCAGACTGCTGTCTCTTCCCCCCGTCTTTTTAAATGACACGCGTTACTGGTATCCTTATCAGCTGAATGTTAAGGGGTTTGTTGGAGCTAATCGGGTGTTCTCCAACTCCACCACAATGTTCTTCAGTCCCAAGTGCATGTCCATCTTCATCCAGACCGACAAGAACAACTACCAACCAGGGCAGACGGTGAAATTTCGGGTTGCATCGGTTACGCCTGAAGGCAATCCGTACAAGGGTCAGATCGATATTTTTATCAGGGATCCCAAGGGGAATTTGATTCGGCAGTGGCTGTCTGTGGACTGTTTTCTTGGTGTTGTTTCGAAAGAGCTGAACATCTCTAAAAACCCGCCACTTGGCTCTTGGAAAATTGTCGCCGGACTCAATgATGTTGTACATGAGAGAGAGTTCACTGTGGACAACTATGTGCTGCCTAAATTCGAGGTGAATGTGAGCGTCCCCTCGACCCTGCATTATGAAGACAAACTGACCGGGACGGTCACAGCCAAGTATTTTTATGGGAAGCCCGTCAGTGGGGTGATGTCTGTCACATATGTTCACTTTTACAATGGCCTACAGAAGCTTTACCAATCCAAAGAAACAATTGACGGTTCTGCTGCTATCACATTCAGTGTGCCGTACTCCAAACAGTTAAATGACTACACATACTCCTATTATGAAGGATATGGGGCCAGTGAATATGTGGACATTATGGTGAATGTCACAGATGTTACAGGGTTAACCTACAACGGCAGCGCGAGGACTTCTGTTGTGAAGAATAAATATAATCTGGAGTTTCTGCAGTATCCACGGATCATAAAACCCTCCATGACCTTCACTGCTCAGCTGAAGCTAAGCATCTTTGATGGCCGGCCGCTGTCAGCTGAAGAGCAGAGCAGAAGCGTGCAGCTGGCAGTGACCCAGCACAAGTACAGCCCCTGGACGTGGATGTGGAACACGGGCGAATCCTCAGCGCCTCGATCAACGAACATAACGGAAAACACAACGGAAAACACAACGGAAAGCACAGCGACCAGCTTCTATCCCATTTTTGATGTTCCAGTGGAAAACATCGATCTTCCCATCACTGCTGATGGCGTGATGTCTTTCCAGATTCAACTCACTGACAGTGTCGCCACTCTGTATATAGAGGCCAGGTTTGAAGACACAGTCCAGAATCTTCAGCTCTACAGGACTTATACTTCACCGAGCGGATCCTACATACAGCTTCACAGAAAAAGTGAGCCCCAGGTCGGAAAGGAGCTGTATTTCACTTTGGAGAGCAATTTCAATCTGACAGAATTTCACTACTTTGTGATGTCCCGTGGTTGGGTGGTGGATGCTGGGACGGTACATTCCTCCTCCTTCAGTCTGAACACAGATTACTCTTGGACTCCATTGGCCTGTGTGATGGTGTACCACACGCTTCCGGACGGAGAGATCGTGAATGATACTCTGCTAGTTACTTTCACACAAGTCTTAAGGAACACAATATCTCTGAGCTGGAGTCAGGATCGTGTGGAACCAGCAGATTCCATCTCTCTTTCCGTGTCTGTATCCGAGCCCGGATCTCTGCTGGGAATCCTGGTGGTGGATAAAGCAGCACTGGACTCCAGCAAAGACAATGGCATCACAGAGAAGACGgtgCTGGAAGAATTCATGTCGTATAGCATAGACATGACCTACGCGGATTACAGCAGCATGGAAATGGGAGATCCGTATTCCGTATTCATGACGGGCAGGTTCACCGTTCTGACCGATGCCAAACTCCATCAAGAACGGAGTGACATATTACCTTTTTTCCGGACGGCGCTCTTAATGAATCAGCAAGACAGCAGTGGTTTCCAGGAGCCCAGAAAGCGAACAGACTTTCCTGAAACCTGGATCTGGCTGGATGCTAATGTGAGTGATTCTGCCTTGGATTCTTTCCATTTCACCGTGCCGGACAGCTTGACCTCATGGGTGGCCTTTGCCATCGTGATGTCAGAAAATCTAGGTTTGGGCATCAGTGCTCCTGCAGAGTTGACTGTGTTCCGAGATTTCTTTGTGTCACTGAATCTCCCTGCGTTCCTGATCCGTGgggagctgctgctgctggaagCCAATATATTCAACTATATGGATGTAGATTTGGAGGTGATGGTTGTGGTTGCAGAAAGTTGGATGTTTGAGTTTGTGTCACCAGACAATGGAGGACTTTCTTTGGACAACGTGAGGAAAGTCTCAGTGATGAGTCAGAACATCACAACGCTCCTGTTCCCCATCAGAGCCACTGCTCTGGGAGACATTCCCATCTCCGTGAAAGCCACGTCCATCTACTCTTCAGACTTGGTCTTTAAGACGGTTCTTGTCAAGcCAGAGGGACTGGAGCAATCATACTCTGAAACCTTGTTTCTGGAGTTTCAACCGAAGCAGAACACGCTGACTAGCACAATGTCGTTTAATTTTCCTGCAAATGTGGTTCCTGGCAGTCAAAGGGCCAGCGTGTCTGCTGTGGCTGATATCCTGGGCCCATCCATTGGCAATCTGGACTCTCTCATTGAGATGCCTTACGGTTGTGGAGAGCAGAACATGATCCATTTTGCTCCAAATATTTATGTCCTGCAGTACATGAGAAGGACCAAGCAGACCAATGAACAGACCAGAAACAAAGCTATGAGCTACATGATGGAAGCTTATGAGCGTGAGCTTTCCTACCAAAGGGTTGATGGCTCCTTCAGTGCTTTTGGAGACAGTGATGACTCTGGCAGCACATGGCTGTCAGCGTTCGTGCTCAGGTGTTTCCTCCAGGCTCAGGGCTTCATTTCCATCGACCCGATGGTGATACAGAGGACAGTGTATTGGCTGCTTGCTCATCAGAACGCTGACGGTTCGTTCGCCGAGCCGGGTCGGGTCATCCACACAGAGCTCCAGGGAGGAATGGATGGGCCGGTGTCTCTTACAGCATATGTCCTTATAGCACTTTTGGAGGACGCTGAATACAGGACTGCATATGAAGACAGAATCTCTACTGCCGTGAGTTTCCTGACGTCTCGACTGGCTCAGAGAATCTCCAGTAACTACAGCCTGTCTTTAGTCACCTATGCTCTGTCACTGGCCAACAGCACCGCCGCCCCATCTGCCCTCACCGAGCTGCTGAACAGAGCACTAATTGTTGATGGAGTGCCAACCTGGAGACCTCCAGCCAGCGTCCTTTACAATTCCTGGCAGCCAAGTTCATCAGATATTGAGATGTCGGCCTACGTCCTGCTCGCCATGCACAGACTCCAACTAATGGATGAAGGATTCATTCTGGTGAAGTGGCTCAGTAAGCAAAGAAACCATCTTGGGGGATACGGATCCACTCAGGATACAGTGATGGCGTTGCAAGCTCTGTCAATCTACGCCATCTTCAGCAGCGCAGAGTCCATAGACGTCTCCATCACTGTGAACGATGCCTTAGGCACTGCCGCTGTGTTCAACATAGACAGATACAATTACCTGGTCCAGCAGAGTCAAGACCTGCCCATTGAAGCACAAGAGGGGGTTGATATTGAGGTGGTGGCAGAGGGTAAAGGCTTCGCTCTGTTTCAGCTTAATGTGTTCTACAACGTGATGAACCTGAAAACATCACTCAAACGGCGTGATATACAAACAGAAGAGGCCTTTTATCTGTATATAGACGTGATGGACAATGAGGAGTTCACTGTAGACCTTCAAATATGTTTCAGGCTGAGGGAGGACCAGGGCCTGAAACAGACGGGTATGGCTATACTGGACGTGGGATTACTCACAGGATTCAGTTTGTCCCATAACGGTGTCCAGCTAAATGATATAGTCAGAAGAGTAGAGACGGCTTCAGGAcgagttacactttatttagaCACAGTGACAACAGAAGAAAAATGCGTTGAAATATCCACCATCCTGGACTTTAAGGTGGTCAATGTCCAAGATGCTGTGGTCATGATCTACGATTACTATGAGCCCCGACGGAGGACAGTGCGGTCCTACACATCCGAGTCAAGACGGGACATGTCTGTGTGTTCGTTATGTGGGCCAGATTGCTCCCAGTGTGGGGTTCGAGACATCTGGGCTACTGCCGGGACGCCGTCCGTTAACCAACATCCACTTCTGACTCTAAGTTTGACCACAGCACTCTTTATCCTTCTGTCAATCTGCAACTAGTGTTTTCCCTAAATCAAAACCGCTGTAATCAGTAACACGTAACACAATTTATAAAGCTAAATTTATgtgtaaattgtttttaaaaaatggtttctgtaaatgtgaaagaaaaatctgtGTAAATTCTACGTGTGAAAATTGGTGCATTTAGTTCAGTGCAACAATGACAAACAGTTTAGACAGATTTTGTTACTTTAAATGAGGTTTcagcaattaatattttattaattaaaaagaaatgattacatcaaattaattattcaactttcgattaatattataataattattataattcatgaattaattattgattaaataaaagatgcttttattttttagatttttccgATGCACCCTGTTTTTTtgtctggctttttttttttttatgagaataATTGAAATAGTAAATCGGGGTCAGGCTCAAAACtgataaattaactttttaaatgtaattctttCACTGTGATTCTTGCATTCTCTGTCAACATTGTAATAATCCACTGCTTAAAGCTGCGTTACGTACCTCAGTTACAAATTTTACAATAGTGAAcatgtttgtcttttttgatCTTGTGATGGCTTTTATGAGTTTCAACattatttgttcattatttgACGTTCCTCTTTATCAATTATATACAAAGTGACCTACGTTGAATTTTGACCTTTAGTTACAAACATGCAAACTttggaaaaattatatttttgcccGCTCGAGGAGCGAGTGTTTTAATTTGGGAAACAATAGATTTAAGTTTCGACATTATTTGCTCTTCAGACATTCCACGTTAAAAGATAAAAGTATCAGATGTACGCAAAGAGACCCACATTTAGTTTTTGACCGCTGAGATTGTGTAAAAGGACTTTAAATCTCAGGTGAGAATTCCCTCTATAAAACAGTGTAGTAGTAAAtcagaaaatattaattcatagcatttgatattttggtttttgtcaattttcgacctttctttagaaaaaacctgaaatgataaaaatggaGAGTCACTCCACTGACCTGAATGCAGctatattgcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207404 lncRNA downstream 153936 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA downstream 153936 20789906 ~ 20791701 (-) False G140449
TU207360 lncRNA downstream 287280 20634310 ~ 20658357 (-) False pkib
TU207356 lncRNA downstream 318774 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 533776 20410629 ~ 20411861 (-) False nkain2
XR_006247242.1 lncRNA upstream 27599 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 31444 20996366 ~ 20996681 (-) True G140522
XR_006247273.1 lncRNA upstream 80903 21045825 ~ 21049976 (-) True LOC122325251
TU207582 lncRNA upstream 118372 21083294 ~ 21083559 (-) True G140592
TU207583 lncRNA upstream 125062 21089984 ~ 21090943 (-) False nkx2.2b
XM_043218861.1 mRNA downstream 187903 20745202 ~ 20757734 (-) True hmbox1b
XM_043218863.1 mRNA downstream 187904 20745202 ~ 20757733 (-) False hmbox1b
XM_043218862.1 mRNA downstream 187904 20745202 ~ 20757733 (-) False hmbox1b
XM_043218860.1 mRNA downstream 227540 20706925 ~ 20718097 (-) True ints9
XM_043218859.1 mRNA downstream 227664 20706925 ~ 20717973 (-) False ints9
XM_043219753.1 mRNA upstream 3266 20968188 ~ 20975755 (-) True crnkl1
XM_043219541.1 mRNA upstream 114882 21079804 ~ 21082714 (-) True nkx2.4b
XM_043220497.1 mRNA upstream 124482 21089404 ~ 21091008 (-) True nkx2.2b
XM_043219327.1 mRNA upstream 189463 21154385 ~ 21168059 (-) True LOC122324706
XM_043219167.1 mRNA upstream 285826 21250748 ~ 21256606 (-) True tram2
TU207179 other downstream 882660 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 886034 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 887138 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1330435 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1641669 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 8482 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 233788 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 544707 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 767624 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 876191 21841113 ~ 21841468 (-) True G140883

Expression Profile