RNA id: XM_043218877.1


Basic Information

Item Value
RNA id XM_043218877.1
length 3134
RNA type mRNA
GC content 0.40
exon number 20
gene id adgrg11
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21799332 ~ 21815029 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCCAAACATGATGTTGTTGCTGCCGTTCTGCTCTTAATGCGTGTTGAGCAGTGCGTGATTCACATAGCAAGAAGAATGAGTCCCCAGACAAGCGACAGCAGCTCAATGAACAGAACCGAAGACGAATCAGAAGTGACATCATGGCTATTATTTGCATCAAGAGGTGTGAATAGCAAAAACAGAAACCCACAGGGGGAGGGAGGAAATGCTACATGCAAAATTATGTACCGTCTCTatctgatgaaatgaaaatttcttTTAAAGACTCAGCGACTCTTCAACAGctattcagattttattaaggAACCTTGACATCCTGTCCAGGATGAAGTTGACCAATTGTGGCCTCCTGCTCATTGTATCCGGCGCCTTCTGCATATCTTTAGGAAATTTCTGTCTTAAATGTCCTCCTCCTTCACAAGAGACTTCGCAATGTTCGGATAATGGGGGGATGGATATGCTGATACTGGGTAGAGATGGTTTCATGGGATACATGACAGgTGCATGCAGTAATGGTACATGGAGAAAACTACAGTGCCAGTCTACTATTCCTTGCAATTCTACTGGAGGGTCAGTAAAACCACAACTGCTCAATATGAcagttttttcatttgaaaacaataCATGCACAAACAACCCATGTACAACATACAGCAATGacaatggtgtgagtttgtctAGATCCCCTCCATACACACTCAATATAAGCAGAAGTGTTATACCCACGTTTGTCTGTTTAATTGAAGCGAAGTGCAGCAAAATGATAAACTGGTTTAGTCCTGGACAAGATTGTATGTGGACCAACACAAGCACTAAATATGACCAAAcatgtAATATTACCTGCGTGAATCCCACAAAGCGCTGCAAGGATGCAAAATATGACAACAGCTGTAGCGgggatgaaagtaaaataaacaacattaagtttcaaaatgaaacttcattttgttataaatgtgGAAATCCTTTTCAAGTTATGGAAACTGTCGTCTTACCGAACgaaatgtcaaataaatttaatactactaaaacagaaacagatgcTGGTGCAGCTGCTGAGGTTATGAAAAGTCTTGCCAGCATTGTGGCTACGATGAAAAATTTGACCGTGGCCTCTATATCCATGGGTAACGTTAAAGGGATTTTGAAGAAAATTTCACCAGAGTCCAAAATCAAGACGTCCTACTTAATCTACTCTTCAGCAACTGGCATCAGAGTTTTAGAAGATGCTGATGTACTGAAGAATTATTCCAACGCTTTCAGTATTCCAGAGGAAGCCGCTATGAAAGCGCTCAACCAAAGTGCAGAAAACGCTTTTATCAGTGTGTTCCGCTTTCCCAATATGACAAAGgatgcAGAGAACAGTACGGTTTTAaatgatgaggtttatgcaaTCGAAATGGGGGCAAATATTACCAATCTGAGTGACCCTATCAGCTTGACCTTCAAAATAAGTCagACGGTGATTGGATCTCCTGTTTGTAAATCATGGGATGGAAATGGAAGTCAGCCAAATTGGACAACTGAAGGGTGTATTACCATTAAAGGACAAAACGATATAACATGTAAATGCGAACATTTGACTTTCTTCGCTTTGCTCATGATCCCTCCAAATGTAACCATTTCCTCAGAAGACCTCAACGCTCTCACCTACATCACCTACATCGGCTGCGGCCTCTCCTTGTTCTTCCTGTCTATCGGGCTCTTCATGCACTTTCTCATAAGGAAAGTGAAGGCCACTGATTCAGCCCACGTGCTGATTAATCTCTTTGTGGCGCTGTTCCTGCTCAACGTGGCCTTCCTGTCGAATGAGTACGTAGCACGTGCAAAAGACACCACTGCCTGCAAAGTCATGGCTGGATTCATGCACTACTGCTTGCTATCCAGTTTCACCTGGTTTGGAGTGGAGGCTTTTCACCTCTGCCTGCAGATGGCCAAACACTCAGTCACCATCAAACATTACATCCTCAAGATCTCTGTGGTTGGCTGGGCTCCTCCTGCTCTTGTTGTCAGTGTCATTTACGCCCTGCACAGATATGGCGAGCAGACCATAACAACGGGCACAAGCAATGTAACTATGTGTTGGATTTTAGACTCTGATGTCCACTACTACGTGAACATCGGTTATTAcagcttcatcttcatcttcactTTTAGCACTTTCATTGTTGTGCTGCGATGGCTCTCCATGTTGAAGATGAGCAGGTTAAACACGGTTACAGTGGTGAAGCACTCAAGAACCGCCACCTCGGACATCACCTCCGTCCTGGGCCTCTGCTGTATGCTGGGACTCACCTGGAGTTTTGCGTTCTTCGGCTATGGAGCTCTGCGTCTGCCATCATACTACATATTCACCATCCTGAACTCCCTTCAAGGATTGTTCTTGTTCATATATTACTTGAAAACAAGCACCCTTATAGGAGACCCAGCAGCTTCAGAAGAGAGTACCATGACTGAAGTCACCAATACAGAAAATCCATACGAAGACCTGCCAACAGAAGACACCAAAAAAGCCACCTGACCTTCATCTCTAAGTCTTTGGATTTGAAATGTCTGTCTGTTGATATTTTCTATTCCTCTGTAGTATTATAGTGAGTCAGTCCACTGCACATTTTGTCCTGTAACATACGTACTTCTTTATGTACTCTTTAGAAATTAAGAACATGCCTTCTTTCAGTTCGTGAACTTAACTGAATTGTAATTTCACAAAATCTAATAAGTTTAAgactaaataaagaaaatattttaaaaataaaaactgtataactaataatgtattataatccaatatataatacttaattACTAAATTTTCTTGGAAAAACTGTTACATGTGTAGCTGAATTTCATAATACAATGCTATTGCTATTGatgaatttgtgtttgtgtaatttcatgtgtatacatttgttttgtttaaactaaATACTTATTACTGCACTGTGATAGAATTTTACAATGCTTTGTTAATTTATCAATACAGTGGGTATATTTTCTGTCTTTGACTTTGGTAGTTTATGAACAGctctaaaaatataactttctATTGTGCTTTCATTACCTGTTTGTGTATACCCGTGTACAAGCGTTTTATTGTTGACAGGTCACATATATAAACTCGAAATAATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207872 lncRNA downstream 24963 21771030 ~ 21774369 (-) True G140801
TU207947 lncRNA downstream 30735 21727653 ~ 21768597 (-) False G140859
TU207948 lncRNA downstream 30735 21727653 ~ 21768597 (-) False G140859
TU207946 lncRNA downstream 30735 21766949 ~ 21768597 (-) True G140859
TU207881 lncRNA downstream 100057 21698420 ~ 21699275 (-) True G140807
TU207986 lncRNA upstream 25486 21840515 ~ 21840765 (-) True G140882
TU207988 lncRNA upstream 26733 21841762 ~ 21842034 (-) True G140884
TU207989 lncRNA upstream 27097 21842126 ~ 21842345 (-) True G140885
TU207990 lncRNA upstream 27403 21842432 ~ 21842922 (-) False LOC122324884
TU207991 lncRNA upstream 28986 21844015 ~ 21844633 (-) False LOC122324884
XM_043218886.1 mRNA downstream 200 21794229 ~ 21799132 (-) False rad51
XM_043218887.1 mRNA downstream 294 21794228 ~ 21799038 (-) True rad51
XM_043218879.1 mRNA downstream 11846 21779327 ~ 21787486 (-) False zc3h14
XM_043218880.1 mRNA downstream 11848 21779327 ~ 21787484 (-) False zc3h14
XM_043218878.1 mRNA downstream 11848 21779327 ~ 21787484 (-) True zc3h14
XM_043219612.1 mRNA upstream 9526 21824555 ~ 21835801 (-) False flvcr2b
XM_043219611.1 mRNA upstream 9526 21824555 ~ 21835801 (-) True flvcr2b
XM_043219615.1 mRNA upstream 9526 21824555 ~ 21835799 (-) False flvcr2b
XM_043219614.1 mRNA upstream 9526 21824555 ~ 21835799 (-) False flvcr2b
XM_043219613.1 mRNA upstream 9526 21824555 ~ 21835799 (-) False flvcr2b
TU207950 other downstream 58328 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 286979 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 520591 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 823582 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1736355 20061602 ~ 20062977 (-) True G140277
TU207987 other upstream 26084 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 30777 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 297573 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 300009 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 300678 22115707 ~ 22115789 (-) True trnal-uaa_37

Expression Profile