RNA id: XM_043218878.1


Basic Information

Item Value
RNA id XM_043218878.1
length 2457
RNA type mRNA
GC content 0.50
exon number 16
gene id zc3h14
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21779327 ~ 21787486 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGCCGGCTGCGCATGCGCAGTATGAATAGATAGGCGGCACGCGAGGCCTAGCAACGACAAACTgttcttgtcttgtttttttgtatgtcttGTTAATTGAAATAGTGTCTCGAATCCGAGGGGAAGCAACAAACCAAACAAGAATGGAGATCGGAACTGAGATCAGCAAGAAAATACGGACCGCAATCAAAGGAAAGTTGCAAGAGCTCGGCGCATATGTGGaTGAGGAGCTTCCAGATTACATCATGGTCATGGTGGCCAATAAGAAGAACCCAAAGCAGATGGCAGACGACCTGTCCTTGTTTCTAGGCAACAATACAATCAAGTTCACTGTATGgctACATGGTGTTCTGGACAAGCTAAGATCGGTTGCAGTAGAGCCCACACCTCTCCGTCCATCCGTTCTGCACTCAGAGACCAGCATCCCAGCAGAAAACAACCGGAGGGGGGTGGAGCCTCGCACTCTTGCTGTTTCCAGCTCGCGCTCTGATAAGCTGGAGGGTCGAGTCTCAAGCTCAGCCCACGAGAACCGCACCAGCAGGAGAGGCTCTTCTGAAAGACCCTCCAGACTCACATCCGCTGTCAAACCACTGATGGAGGCGTCGGCAGAAGCTGTGATTGACATCAAGCCTGATCTGGATGATGACCTCATTGGCTACGACCCCCTGGAGCAGAGCTTGACCCCTCAGCCTTTATACAGCCGCTCGACCATGGACAGGCCACGACCAGTGCTGGAGTCTTCAAGACAGACTGCAGATGCTTACAGGTCCTCAGACGTCACGAGAGGTCAGGAGAGGTCAGGTTCCAGCCATGGCCGGGGCTACAGGAGCTCAGCGGAGAGCAGCAGGGAATTGTCCCGAAAACGAAAGGCGCCTGTTGCCAGTTCGGTGGTTCGGGTTCACAGAGGTCATGAACGCGGACCAGAGAGTGATGATCTgaatgaggaggaggatgaagatgaggaagacTACGGTCTTGCCAGCAAAGTGTCTCTTCCATCGAAACCTGAGCGCAAgcCTTCTCTTCCACCAGCTAAACAAGCCAATAAAAATCTGATCCTCAAAGCAATCTCAGAAGCTCAGGAATCCATCAGTAAAACCACTACATACACagTTCCCCAGCGGCAAACGGTTCCTGTAGCACCACGGACACGTTCGGCGAGCGACGAGATGAATAATGCTGCAATCCGATTGGTCCAGGAGCACCTGCACGCTCTCACACCCCAGGAAACGCTGCACAATGcacaATCCATAGCTTTAGCATCTCGTCTGCAGTTGGAGCTTCCAGAAGAGGACAGTCGAGAGCAGCTCGGTGAATACAagctGCAGGTTTTGGAGGCGGCGAGACTCAACGCTCTGGACACTCGTTCGTTTATCATGAGGAAGCCAGAACTTGAACAGACTCCAGCGAGGAACAGGCCTAGCGCTGTCAATCAAGCCGAAGACCCACCCGTCACATCCCGAATGGTGCAGGCCAGAGAGAGAGCGGAGGTCGTGGAAGCTGCGAGTCCCAAGTTCATCGTGACATTAGATGGAGTCCCCAGTCCTTTAGCAAACCGCACAGATCAGGAGATGGAGCCTGAGGATGAGTTCAATGCGACCTCTGACCTTCCAGAAAATAATGGACCCAAACCTGCTGTCCACCTCAGACTCGGCACTGAGTTTCTAAACACAGGCGATAGAGAGCCGGATGAGGTGGAGGACATGGACGTAGAGCCGGTTCAGGCTAAACGACAGAAACTTCCAGAACGCTGCAAGTTTTGGCCCGCGTGTAAGAGCGGAGAAGAGTGTCTGTACCATCACCCCAACACACAGTGCAAAATGTTTCCCAACTGTAAATTTGGCAACAAGTGTCTGTTCATTCATCCAAACTGTAAGTTTGATGCCAAGTGCTCCAAAGCGGACTGTCCATTCACACACGTCAGCCGCAGACTCAGCAGTAACCCTACGAGAGCAGATCCAGCTCCAGCCAGCACCGTGTGCCATTTCTTCCCAGAGTGTAAAAAGCTGGACTGTCCCTTCTACCACCCTAAACCGTGTAGATTTGCGGCGCAGTGCAAGCGAGCGGGCTGTACTTTCTACCATCCAGCTGTGGCCGTGCCGCCCAGAAGTGCTCTGAAATGGACCAAAACACAGAGCAGGTGCCACAAACTCGGACTATTACAGCAAAGCCTATAAAATGTACTTGTGAAATCAAATATCTGTAATCATCAAATCTGTTTCTTTCCCCACAGTTGAGAAATACTGGAGTAACTGATCACGCCTGAGCTGCAGCTTTTCTACGGTTCATGTAGAGCTTTCTATCTCTCACATcatttttgttgtgcttttttctttcttccttttttttttttttttgacatttttaaaacaaatgagttTTATAAATTGCAAGTTCCTGTAAGCtatttacagaatatatttgGTGTATTAAATGtcaacaatacacacacaca

Function

GO:

id name namespace
GO:0016607 nuclear speck cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K23038 ZC3H14; zinc finger CCCH domain-containing protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207872 lncRNA downstream 4958 21771030 ~ 21774369 (-) True G140801
TU207947 lncRNA downstream 10730 21727653 ~ 21768597 (-) False G140859
TU207948 lncRNA downstream 10730 21727653 ~ 21768597 (-) False G140859
TU207946 lncRNA downstream 10730 21766949 ~ 21768597 (-) True G140859
TU207881 lncRNA downstream 80052 21698420 ~ 21699275 (-) True G140807
TU207986 lncRNA upstream 53031 21840515 ~ 21840765 (-) True G140882
TU207988 lncRNA upstream 54278 21841762 ~ 21842034 (-) True G140884
TU207989 lncRNA upstream 54642 21842126 ~ 21842345 (-) True G140885
TU207990 lncRNA upstream 54948 21842432 ~ 21842922 (-) False LOC122324884
TU207991 lncRNA upstream 56531 21844015 ~ 21844633 (-) False LOC122324884
XM_043218899.1 mRNA downstream 15504 21760122 ~ 21763823 (-) True si:ch211-153j24.3
XM_043218898.1 mRNA downstream 15511 21760122 ~ 21763816 (-) False si:ch211-153j24.3
XM_043220461.1 mRNA downstream 24134 21750876 ~ 21755193 (-) True jdp2b
XM_043220462.1 mRNA downstream 24138 21750876 ~ 21755189 (-) False jdp2b
XM_043220634.1 mRNA downstream 38250 21732544 ~ 21741077 (-) True batf
XM_043218887.1 mRNA upstream 6744 21794228 ~ 21799038 (-) True rad51
XM_043218886.1 mRNA upstream 6745 21794229 ~ 21799132 (-) False rad51
XM_043218877.1 mRNA upstream 11848 21799332 ~ 21815029 (-) True adgrg11
XM_043219612.1 mRNA upstream 37071 21824555 ~ 21835801 (-) False flvcr2b
XM_043219611.1 mRNA upstream 37071 21824555 ~ 21835801 (-) True flvcr2b
TU207950 other downstream 38323 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 266974 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 500586 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 803577 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1716350 20061602 ~ 20062977 (-) True G140277
TU207987 other upstream 53629 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 58322 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 325118 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 327554 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 328223 22115707 ~ 22115789 (-) True trnal-uaa_37

Expression Profile