RNA id: XM_043218896.1


Basic Information

Item Value
RNA id XM_043218896.1
length 3231
RNA type mRNA
GC content 0.49
exon number 16
gene id arhgap18
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 613675 ~ 638556 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAAACTTTCACAATAATGCCGCGCTGAAGATGAGTCGACAGCAGGACGAGCAGGGCGTCGTGTTAACCGCCTACACCAGCAACAGCGAAGCGTTACGGGCTATCAGCTGTAAGGAGCACACGGAGTTTCCCGGAGCGGGAATCAAAGCAGGCACACCGCAGCTTCACCAGTAGACGTTTCCAGCTCATACACTGTTCATCACCGCAGAACCGGTCAGTATAATGTCCAGcgagggaaagcgtccggaGCGGCCCCGGGCCCCAGCTCAGGGAAAGCCCCGTACCAGCGCTGCAGCTCCCAGGACTCTCTGGACGAGCAGGCCATGGTGGACTACTTCAAAGAGGTGGAGATCATCCAGCGCAGCGGAGACGCAGAGACGCAGGAGGACCTGCAGCTGAAGGTGGCTGACGAGGGCGAGCAGGAGGAGGCGTGGCTGATGGAGGCGGGGCTTGCCACGCTGTTCGACGAATCGGCTTCGGGCGGCGAGGACAGCATCGTTCTACTCTCGACTCTGACCCGAACACAAGCGGCGGCCGTGGAGAGACGCGTGGAGACGCTCAAACAGACGCTGCGCAAGCGCAACAAGACCTACAGCGTCCCGGACGTCCGAGAGATCTTTAAACCGTCCCCCGCTTCACAGAGTAAAGATGAGGCTGGATCCACAGAAAGAAGTGGGAGCGATAAACAGGAAGTGGAAGAACTGGGTAATGGGGTGGGGCCCGATGCCGCGGGGGGCGGAGCTGACGCCGAGACGGACATTAACCTGGAGGTGTCGTTCTCCGAGCAAGCACTTGTTTACAAGGAAGGGTTAAAGGTCATCCAGCCCCAGAACGAAGCTGACGACAGGTTACCTGACTTTAAGGTGTCTCAGGATAAGACTGGACAGACGAGAGTAGGCGATCTGTCGGCGGAGGACATGAAGAAAGTCCGCAGGCTTGTTCTGATCGAGATGAGCGCTCTGTTCGACACGTGCAGCATCGAGGTCAAGGCTCATAAAGCTCTCAAGGTCAAAGTGAGAGAGTCGGGTTTGTTCGGTGTTTCTCTCTCTACGCTGCTGGAACAAGATCAGCGGAGGATGCCGGGAGCCAGAGTGCCTCTGATCCTGCAGCGTTTGATCTCTCATATAGAGGAGCAGGGTTTAGATACAGAGGGTGTGCTGCGGATCCCTGGAGCTGCTACGAGAGTGAAGGCCGTCTGTCATGAGCTGGAGCACAAGTTTTATGAAGGCATGTTCCCGTGGGAGAGTCTCAAGCAGCACGACGCAGCCAGTCTCCTGAAGCTGTTCATCAGAGAGCTGCCCTATCCTCTGCTGACCGTGGAGTACTTCAACGCCTTCCTGTCCGTGCTGAAGCTGCCTACTAAGAAACAGCAACTGCAGGCTCTCAATCTGCTGGTGCTCCTGCTGCCTGAACCCAACAGAGACACTCTCAAGGCTCTGATGGAGTTCTTCCAAAGAGTGATCGACCATAAGGACAGGAACAAGATGACACTAAACAATGTCGCAGTGGTGATGGCGCCCAACATCTTCATGTGTAAGGGCTTCCGCAGTAAGATCAGTGAACAGCAGGAGTTCGCTATGGCCACTGGCACGGCTAACATCGTCAGGCTGCTCATCCGCTACCAGAACCTCCTCTGGACGATTCCCAAGTTCATCCTGAACCAGGTGCGCAAACAAAACATGGAGAACCAGCGGAAGATGAACAGAGACAGAGCAGTTAAAAAACTCCTGAAGAAGATGGCGTACGACCGCGAGAGAGCCTCCAACAAACAGGAGAGCAACGCTGAGGCTGAAGGAGGCTTCATCAGGGTCCAGGCTCCTCAGTTCTCGATGGTGTCCATGGCTGTCCAGCTGACGGAGGATTTAAAGGCCTCAGATGTTCTGACTCGGTTCCTCGGTCAAGAGAgGACTCTGTCTGTGAAACGAGAGGATCTGTGTCTCTATGAGATGGGCGGAAACATCAagGAGAGATGTCTGGATGAAGAGACGTACATCAAAGCTCTCCTGGAGCTCAACCCCAGTGCAGAGTGGGTCATCAAACCCGTCCAGCACTGAGCTGCCAATCACCCGGTCCCTGCACACCCCTTACAGACCACCGCAGACCACCGCAGACCACCAGAGGGGAGACAGCAGGATCTCCAACACTACGACCTGCACAGAGACTGTATGAACATCCTTCATAGTAAAAGCCAAAAAAAGCTCAGTGTCTGTGGTCTTTTAGTCTGGTTTGGCACATTTTCATCGCTTGCAAACAGTAGGTTGTTTCACGAAACAAAAATAAGACTAATTcaccagggttttttttatttaaaatctccagGTAGAATCTcatagaagaagaaaaaaaactattttggagcttgttttttttgtaccgTTTTCatcataattaaacattttcgcTCCCGATTTCTTATTACTGTGactctccaaaaaaaaactttgttaatCCTTCTCATTACTTGAggagtgaatatatatattcagtgttGGTCTTTTCATCATTGCAGTCAGCAGTCTTTTATAAAGGAAAGAGGACCCGGGGATATGTTTAATTATCATGAAAATAGTTATCAGTCAGTTAAGTCtgtgtaatttatattaaaaaaaatacttaacttaattaacatttttctttgggggtgaaatatgacccagaccTGTGCTTTACAGGTTTTATGAAGTGCGCCCAGCCTCAAATCTCATGAACATATAGACCGTATACATTGTCTCAGACGCACCGAGGTATACCTTCATCTCCCACGTTTCTTCCTTAAACATTTGATTACATGTGTGATCTCTTGAGATGATAGCAATCAGTCACATGACTTACAGTAGCTCACACTGCCAAGAAAAGTTCGCTTGTTCAGTCGCTCCCAGGGATCTTGGacgtactttttttttttcatgttggaGAAAATAATGCAAGTCAGATAATATTGTACTATATCTGTAAAGGATTAGTGACTGAAAACACAGACCTCATCAAGTACTTCAACGGAGGGAAACACTTGGCACTTAAACGGACCCTGTCTGTTATTTACAGTGATGTCATTGAATGAGTAGTTTCATTAGagctgtgatttttattttttactgctACGTCTTTTGCTGATGTCATGCTTTTATTGTGCTGGAAACTGTGAACCTGGTGAAAAGGACCGTTGCTGTAAGTTTTAATGCTTCTGAAAATAAccactaaatgtttttgtaaataaatttgtaattcCTC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199573 lncRNA downstream 2457 610742 ~ 611218 (-) True G135067
TU199540 lncRNA downstream 7511 605234 ~ 606164 (-) True G135036
TU199539 lncRNA downstream 9369 533615 ~ 604306 (-) True G135035
TU199505 lncRNA downstream 280231 287326 ~ 333444 (-) True G135012
TU199499 lncRNA downstream 327116 282902 ~ 286559 (-) True G135010
TU199578 lncRNA upstream 5384 643884 ~ 647196 (-) False tmem244
TU199721 lncRNA upstream 62039 700539 ~ 709031 (-) True G135185
TU199736 lncRNA upstream 93386 731886 ~ 732431 (-) True G135195
TU199753 lncRNA upstream 126244 764744 ~ 765234 (-) True G135202
TU199765 lncRNA upstream 225147 863647 ~ 863882 (-) True G135214
XM_043220066.1 mRNA downstream 154809 451877 ~ 458866 (-) True si:dkey-126h10.1
XM_043218942.1 mRNA downstream 184787 295938 ~ 428888 (-) False ptprk
XM_043219725.1 mRNA upstream 5071 643571 ~ 650357 (-) True tmem244
XM_043218968.1 mRNA upstream 128943 767443 ~ 822510 (-) False epb41l2
XM_043218967.1 mRNA upstream 128943 767443 ~ 822456 (-) False epb41l2
XM_043218957.1 mRNA upstream 128943 767443 ~ 822456 (-) False epb41l2
XM_043218952.1 mRNA upstream 128943 767443 ~ 822455 (-) False epb41l2
XR_006247189.1 other upstream 115067 753567 ~ 822458 (-) False epb41l2
TU199809 other upstream 299665 938165 ~ 940175 (-) True G135237
TU199808 other upstream 300673 939173 ~ 940175 (-) False G135237
TU199811 other upstream 300673 939173 ~ 965395 (-) False G135237
TU199861 other upstream 464205 1102705 ~ 1103113 (-) True G135276

Expression Profile