RNA id: XM_043218898.1


Basic Information

Item Value
RNA id XM_043218898.1
length 2605
RNA type mRNA
GC content 0.44
exon number 4
gene id si:ch211-153j24.3
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21760122 ~ 21763823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTTCGGCATGCTAACACTTTCTTACACCCATGATGTCAAATGCAAGCGTGTATTTTTGTTGCTTATTTCTGTCAGCTACATGCCTCGTCCCACAATCGCGCACTTGCAGACAAGCCATCTTATACAGGGAGATATAAGTCTGTAATATTCATAAATCGATCCTCTCGCAGGAATGCAAAAGGCAGGCTGCAAACAAGGCACGTAAAATGACGTATCTTGTTCATTCATGTGAAAGCTGCAGGGTTGCAATTTAACAAAATGACCTCGGTTTACGCGCAGCACGCTTTATTTGAAAGCCTAAAACGTTGCATGAAAACGAGCACTGTTTCGAGCGAGGCGTATCTGCGAAATGCCGTATATATATTGGGCTCACGCTTAACTGTCTCCCCTCCGGATCAGTGGTACAGTCTCACAgatttcattcataaaaatcTGCCTCACTATAAAGAGAAGCGGCGTTGATGGTTGGTGCCTCCTAGCGTAGTAACCTCAAtctagatataaaaaaaaaaacgaagaatAGCATTCGGTGACATTAGTCACATTTTAATCTGGTTCCCAGCATCTCCTGGAGCGATCTAGCAGAAGTGATGCCTAAAAACGCGAGTGTTTCTCAGGTGTCTGCAGAACAGCTGCTGCACACATCAGCTTCTGAGATGAAGGATACGCAGAAGACAGGTATTCTGAAGGATGCTGGTGCTCCCTTTGTTCCAACGGTCACTGCTGTAGCTTCAGCTCCAGATCTCAAGTGGATGGTCCTGTCGACTGACATCTCTTCAGTGTCGCCCTGCAGACACGAGAAACCACAGAGCTCATCTCACTCCACAGATGCCAAACCGACTCGAAAGACCTTCGCTGGACGGAGGAAGGGGGTGAAAGATCAGctttctccagaggaagaggagagaaagaggatcAGAAGAGAAAGGAACAAACTCGCAGCCGCGAAGTGTCGAAATCGCAGACGAGAGCTAACCAACAGCCTCCAAGCCGAAACCGATAGCCTTGAGGAGGACAAAGCGGCTCTGCAGTCTGAGATCTCCAGTCTGTTAAAGGAGAAAGAACGGCTCGAACTCATCCTCTCGGCTCACAAGCCCCATTGTAAACTCAAGGAGGAGACGGCGGCAGACAGCGAGGAGCAAACCCAAGCCCAGGAGGAGCAGATTCAAGCTCCCAGTGCCTCCCCAGAACAGGTGCCCACCTCCCCTCAGCAGGCCGACCCCACCAGCGCCGCCATCTTTGGCGACTCCGATGTCCTCCTGTGCTCCAGCGCCGAACTGGGTCCCGCCGAGGTGGAGCCATACATCGATATGCGAGATGTGTCCATGGAAGACATTAGCGAGGTGATTGACAGCGGCGACGACATGGATCTGTTAGTGCCAGATATTGACCTCACTAGCTCTCTGGGTCTGAGCGAATGGGAAACCCTGTACATGTCGATGGGTGGAGGGTTGGAACCTCTCAGCTCTCCGTCATGCAGccccagctgcagcagcaccaGCGCCGTGCCCGTCTTCAGCTTCAGCAATGCAGACATGGAGAAGCATGACAGTGGGAAAGAAGGGAAATCTAATGCAGCCAAAGAAATCTTGACGACTTTATGAAGCTTCTGGCACACCATTCTTATAAATAAAGGTTCCAAGATGGGGTTTTCACAAGGGTGCTTTACTGGCATGTACGGTTCCATGATGATATTGTCCACGCTAAGAACATATGGTTCTTTTAATAGCTGGTCACTAAAAGGATATTTGGGGAACCCAAAATAGTTCTTCTATAGCATTGCCGTGGACCTCCAACAGTTtcggaacctttatttttaaaagtgcaaaaaaaagaacctttcagtttttaaaaaactgttcttTGTTGAAATTTATCCACGCACAAACGTTTCTGATAGGTAAGTGTCTTCATAGAAGAATTGATGCTAATaatgaatctttattttttaaataatcattctATGGCATTGGTGTGAAAACACCTTTTGGGTTTCCCGGGAGAACAGttctatttttctgtttttattagagcagcacattatttttgtgcagtggAAAGGTTTTGtggatgttattttaaatttcttcACGGAACCTTAATTGCCAATAAaggacctttatttttaagagtaaaatGATCTAAGAAAGAAAGGGTGAGCTGTGAAATATTGTTGAAAAACCGAAAAACCCTCATAAAAACGCTTTCATAAATGAGTCTGACATgttcaacatttacaaaaaaaaaatagtgaatgCTGTGCAGTAGATGTACTGTGACCCTTACATCCAGTGAAGTCACTATAGTCACTGTTTGTTTCTTCCAGATGTTGACATTGTTGAATATGTTGTTCATCCTGTGAAAGACATGCTTATATGCACTTTTGTACCATGTAGGTACGTGTAAATGTATCAGTTGGTGTGGTGATGTACAGTGCAGTCTGTTACACCGTGTCTTTAGTGTGTGACTAACTGTTTTTTGCtattgtccaaaaaaaaaaaattataataatctgACCAtggtggcaaaaaaaaaaaaatcattatgcattttttttgttcttcctgCTTCCTTTTCAATGGTCTGgcatgtttataataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207881 lncRNA downstream 60847 21698420 ~ 21699275 (-) True G140807
TU207904 lncRNA downstream 88198 21576838 ~ 21671924 (-) True G140824
TU207906 lncRNA downstream 191762 21567633 ~ 21568360 (-) True G140826
TU207896 lncRNA downstream 207891 21549084 ~ 21552231 (-) True G140817
XR_006247240.1 lncRNA downstream 247639 21507244 ~ 21512483 (-) True LOC122324936
TU207946 lncRNA upstream 3133 21766949 ~ 21768597 (-) True G140859
TU207872 lncRNA upstream 7214 21771030 ~ 21774369 (-) True G140801
TU207986 lncRNA upstream 76699 21840515 ~ 21840765 (-) True G140882
TU207988 lncRNA upstream 77946 21841762 ~ 21842034 (-) True G140884
TU207989 lncRNA upstream 78310 21842126 ~ 21842345 (-) True G140885
XM_043220461.1 mRNA downstream 4929 21750876 ~ 21755193 (-) True jdp2b
XM_043220462.1 mRNA downstream 4933 21750876 ~ 21755189 (-) False jdp2b
XM_043220634.1 mRNA downstream 19045 21732544 ~ 21741077 (-) True batf
XM_043219766.1 mRNA downstream 29894 21713484 ~ 21730228 (-) False LOC122324966
XM_043219765.1 mRNA downstream 29894 21713484 ~ 21730228 (-) True LOC122324966
XM_043218879.1 mRNA upstream 15511 21779327 ~ 21787486 (-) False zc3h14
XM_043218880.1 mRNA upstream 15511 21779327 ~ 21787484 (-) False zc3h14
XM_043218878.1 mRNA upstream 15511 21779327 ~ 21787484 (-) True zc3h14
XM_043218881.1 mRNA upstream 15511 21779327 ~ 21787483 (-) False zc3h14
XM_043218882.1 mRNA upstream 15511 21779327 ~ 21787168 (-) False zc3h14
TU207950 other downstream 19118 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 247769 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 481381 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 784372 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1697145 20061602 ~ 20062977 (-) True G140277
TU207987 other upstream 77297 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 81990 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 348786 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 351222 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 351891 22115707 ~ 22115789 (-) True trnal-uaa_37

Expression Profile