RNA id: XM_043218927.1


Basic Information

Item Value
RNA id XM_043218927.1
length 3185
RNA type mRNA
GC content 0.42
exon number 8
gene id frk
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2367664 ~ 2378853 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTCAGAATCCAGTATCTGTTCACGCTGAGCGATTTCTTTCACGAGCTCGCCCAAATCACCCAGCATTCTCGGGGTTTTACTTAAAACTTAAGACAGcctacgatttttttttttcttttaaacttacGGTTTGCGGTCCTGTCATCTGCTTTGACAGGTCCGAGGAGCGGAGAACGATCTTGAACTTTGTCAGGGGAATGTGACCAGGAAACGcgaacagattttttttgacTGCAAGCAATAAATCGCCTGCTTTATTGTCGACGGGACTGCGCTATCTCGTGTCACCGGTCCAAGGGTTTTCACAGGCTCGCGGTATGGACGACACGCTTCGTCTCGGGTTCACTCAAAATTTacaggaatgaaaaaaaaacccagtggATCACTGACATGCGTTATACTGCTTCGATTTAACTTGATGTACTGGTGAAAAACTTCACGATGGAAGACTTCAGAGAGAGGTTTATGCTGTGCTGTCAAACTACTTTCCCGTGTTTCAGAGACCCGGCGAACAGCACCCCATCTAGCACCGTGAAAGGGAATAATTGGGGGGTAACCGAAGACTTTACAAAGCCGCCAATCAGAGTGTTACCTCCGACACCTGTGGAGAAACACGGCTACGTTTACGTCGCGCTGTACGACTACACGGCGCGCACGGACCATGATTTGAGTTTTCACGCAGGGGATAAACTCGAGCCACTGAAGAAAGAGGAAGACTGGTGGTACGCGAGAGGAATCACCGGGATTTCGGTAAACAAAGAGGGCTGGATTCCTGCTAATTATGTTGCACTTGTGGAAAGCCTCGACGCTGAACCATGGTATTTCCCGGAAACAAAGCGATTGGAGGCCGAGAAGATGTTGATGTCTCAAGAGAACAAGAACGGAGCTTTTCTAATCAGGAACTGTGAAAGCCAGGCAGGGGAGCTCTCACTCTCAGTGCTGGACAATGGAAAAGTGAAGCATTATAAGATCAAAAGGCAGGATAATGGTGCCTACTGTGTGTCAAGGATTCGTAGTTTTTTCACATTGAAAGAACTAGTGGAGCACTACTCCAGAGTTCAGGATGGCCTCTGTGTTCGTTTGGCAGAACCCTGCAAAAAAACAATGGCTCCAGAAACACATGGCCTATCTTACAACACTGTGGATCAGTGGGAAATCCCACGTTCCTCTCTAAAACTGTTGAAAAAGTTGGGAGCAGGGCAGTTTGGCGAGGTCTATGAAGGCATATGGAATGACAGCACAGCTGTCGCTGTCAAAACACTCAAACCAGGAACTATGGATCCAAAAGACTTCCTGCGAGAAGCTCAGATCATGAAGAAACTCCGTCATGCCAAACTGATTCAGCTCTATGCAGTCTGCACTACAGAAGAGCCCATCTACATCATCACGGAGCTCATGAGCCACGGGAGCCTACTAGAGTATCTGCAAAaaaacagaggtgcttctctCCAAATGTCTGATCAGATAGAAATGGGATCCCAAGTGGCATCTGGCATGGCATATCTTGAGTTGCAGAACTACATTCACAGAGATCTCGCAGCGCGAAATGTTCTGGTGGGAGACAACAATGTGTGTAAGGTGGCTGACTTTGGCTTGGCACGAGTATTTCAGATGGAAAATGATAATGTTTATGAGGCGAAAGAAGGAACCAAGTTTCCAGTGAAATGGACTGCTCCTGAGGCAATCCACGAGAACAAATTCACCATAAAATCTGATGTCTGGTCTTTTGGGATCCTACTTTATGAAATTGTGACATTTGGACAGATGCCTTACCCAGCAATGACAAACTTTCAGGTGGTCCAACAGTTGCCCAAAGGCTACAGGATGCCATGCCCTCCCAACTGCCCAAAATATTTGTATGACATCATGTCTGAATGCTGGAAGAACTGCCCTGCGGACAGACCCACCTTTGAAACTCTGCAGTGGAAACTCGAGGACTTCTTTGATATGGATGTCAGCTCTTACGATGACGTGAACCGCTACTGAAAGACACAGCCGCTTACAAGTGCTGGGATCTGAGCCTGtgaggcttttttttaaagaaccaaaTGCCTTTATGTATTCTTTAATGTACACATATAACTCTGTGCACTCATCAAAAGTTTTCCTATGTACAAATGGCATTAGTTAAAGATGAAGTTGTGTAGTCATTTGGATGTTAAAATGCCTTCTCCCATCCCATGTTAATATCCGCGGAGACAACAAAGTGCTTTTAACACTGTCTATGCTGTTGTCCAGTGACAAACTGGGAAATGGGTGGAATTGGAAACCAGTTTGCACAGTCATAATTTATGCAGATCTGTTAATGCTGTCGATGTGCAAAATCAGCAATCTACAACACAATTCGGGtttgaatagaaaatatattctgaGCCGCCTTGATGATTtacctttttgcatttttccatttattctGTGGAGGCATACCCCATCTGTATTTACTGCTGTGTGCATACTGTATGCCATCATAATGATGGTTTAGTGTCAGTTGACTTGCACTCATGCTGGTGCAATGAAACCGAAActattgaataaatataaagagcCTTGCTGACAGAGTTGTCTGGAAACAGGTAGCAGTGTAGCTGGATTGACCTGTTTTATGTTAAATGAGTCACTGCCTGTCTGACTAGCAGCATTACTTATTGTAAGAGGGGAATGTTAAGAATCCACTACATGCATTTAAGCAAAAAGCACACACTGAGACTAGATTCTCAAACCCTAGTGAAAAATCTAATGAGTAGATATATTGTACtgtcagtgatttttttaaatacatttttggtttaaaaagaGCTTCTCTGGGGTTCATTTCCAaactgatttcttttatttttatctttgttGGAAGATAAAAACACTACCTTTTAAAAGTGTGGGGTCAGTAATATGTATACacatttgctgcttttttataAAGAGaccatatcagcatattagaattatttctgaaaagaaaagaagttaTGGCATGCATTAccatacaattttaaatgtgttaaaataggTTTTTTAATATGGAAACTGATTATTAAGATTAAAGACccttatttttgtaaacattctTACTCTCTATTTGCATAATTATGAGCTGAAATATCCATTTTTGTCATTCAGAGtcaaaattaatgtaatgtatttaatgtacaCTCAATAGTGAAATAAATTCGAACGCTTAACAAA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08892 FRK, PTK5; fyn-related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200241 lncRNA downstream 8973 2358478 ~ 2358691 (-) True G135546
TU200237 lncRNA downstream 267423 2099996 ~ 2100241 (-) True G135542
TU200216 lncRNA downstream 354137 2005549 ~ 2013527 (-) True G135527
TU200155 lncRNA downstream 489542 1877914 ~ 1878122 (-) True G135480
TU200091 lncRNA downstream 614717 1752733 ~ 1752947 (-) True G135435
TU200345 lncRNA upstream 198279 2577132 ~ 2577488 (-) True G135627
TU200347 lncRNA upstream 200416 2579269 ~ 2579702 (-) True G135629
TU200382 lncRNA upstream 265328 2644181 ~ 2647081 (-) True G135658
TU200419 lncRNA upstream 353750 2732603 ~ 2737889 (-) True G135674
TU200443 lncRNA upstream 380244 2759097 ~ 2760884 (-) True G135691
XM_043218731.1 mRNA downstream 375485 1989485 ~ 1992179 (-) True si:dkey-121j17.6
XM_043218779.1 mRNA downstream 379448 1976324 ~ 1988216 (-) True smyd2b
XM_043220216.1 mRNA downstream 402367 1934537 ~ 1965297 (-) False kcnk2b
XM_043220214.1 mRNA downstream 402369 1934537 ~ 1965295 (-) True kcnk2b
XM_043220215.1 mRNA downstream 402369 1936819 ~ 1965295 (-) False kcnk2b
XM_043218926.1 mRNA upstream 4328 2383181 ~ 2388664 (-) True col10a1b
XM_043218692.1 mRNA upstream 87530 2466383 ~ 2473993 (-) True gpr63
XM_043218646.1 mRNA upstream 96018 2474871 ~ 2478814 (-) False ndufaf4
XM_043218645.1 mRNA upstream 96018 2474871 ~ 2478814 (-) True ndufaf4
XM_043219034.1 mRNA upstream 101519 2480372 ~ 2533127 (-) False fynb
TU200243 other downstream 2840 2364053 ~ 2364824 (-) True G135548
unassigned_transcript_2411 other downstream 202602 2164990 ~ 2165062 (-) True trnaf-gaa_118
unassigned_transcript_2410 other downstream 202765 2164828 ~ 2164899 (-) True trnaq-cug_70
unassigned_transcript_2409 other downstream 203659 2163934 ~ 2164005 (-) True trnap-ugg_55
unassigned_transcript_2408 other downstream 204125 2163468 ~ 2163539 (-) True trnaq-cug_69
XR_006247260.1 other upstream 363923 2742776 ~ 2757430 (-) False cep170bb
XR_006247261.1 other upstream 363928 2742781 ~ 2757430 (-) False cep170bb
XR_006247236.1 other upstream 1263690 3642543 ~ 3870066 (-) False nrxn3b
XR_006247239.1 other upstream 1263694 3642547 ~ 3870066 (-) False nrxn3b
XR_006247238.1 other upstream 1263694 3642547 ~ 3870066 (-) False nrxn3b

Expression Profile