RNA id: XM_043218941.1


Basic Information

Item Value
RNA id XM_043218941.1
length 5587
RNA type mRNA
GC content 0.53
exon number 35
gene id ptprk
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 295938 ~ 428897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACGTCACGGCCCTCTCTCTCGCCGCTCGCAGCGCAACAGAGTACCGGAGCGAGCGCGAGACGCGGAGAGAGAGCATGGGGCGCGCGGATCGGCTGGAATAAGAAACATTTCCCAACACTTTCAAAAACTTTCTCAACTCGGCCGACAGATATGGATACCGTCATTTTGAGCGCGTTACTCCTGCACACGGCGTTCGGAGGCGCAGGAGCCCAGTACACTCCCGCTCAAATGGGACACGCGGAGAAAGGCGGCTGCAGCTTCGATGATGGCCCAGCACAATGCGACTACCAGCAGGATCCTTACGACGACTTTGACTGGACACACGTCAGCGCTCAAGAAGTGCCCTATCTGCCCTCTGACCTGCCCCAGGGCTCGTACATGATGGTGGACACCTCTCAGCATGATTACGGAGAAAAGGCTCGCTTGCAGCTGCCCGTGATGAAAGAAAATGACACTCACTGCATCGACTTCAACTATCTTCTGTACTGCCCCGACGGTTCCAGTCCCGGGACGCTCAACATCCTGGTGAAGGTCAATAAAGGGCCGCTGGCCAATCCCATCTGGAATGTCACTTCCTGCACAGGCAAAGGCTGGATGAAGGCGGAGCTTGCTGTCAGCACATTTTGGCCCAATGAATATCAGGTCATATTCGAGGCCGAGGTGACGAACGGCAGAAGAGGTTTCATCGCCATTGATGACATCCAGGTGCTCAGTTACCCATGTGATAAATCGCCTCACTTCCTGCGTTTGGGGGATGTGGAGGTGAACGCCGGGCAGAACGCCACGTTCCAGTGCATCGCCACTGTCCGGGATGCTGTCAACAACAAACTCTGGCTACAGCGGCGTAACGGAGAGGACATTCCCGTGGCGGAGAAGAAAAACATCAACCACAGGAAGTTTGCTGCCTCTTTCCGCCTGAGAGAAGTGACCAGTCAGGACCAAGATCTGTACCGCTGCGTCACCCAATCAGAGAGAGGATCTGGGGTCTCCAACTTCGCAGGGCTCATCGTCAGAGAGCCCCCAAGACCCATCGCTCCACCCCAGCTGCTGGGCGTAGGGCCCACATACCTGCTAATCCAGCTAAACGCTAACTCCATATTCGGAGACGGCCCCATCATCCTGAAGGAGGTGGAGTACAGGATGACATCAGGAAGCTGGACAGAGACCCACGCCGTCAACTCGCCCAATTACAAGCTGTGGCACCTGGATCCTGACACGGAGTACGAGATCCGAGTGCTGCTGACCCGGCCGGGGAAGGGGGGAACCGGACAGCCCGGGCCGGCGCTCATCACCAGAACCAAGTGTGCAGAACCCATGAGGACCCCCAAGAGTCTGAAGATCGCAGAGACGCAGGCACGCTTCATCGCCGTGGACTGGGAGTCGCTGGGCTACAACATCACCCGCTGCCACACCTTCAACGTCACCATCTGCTACCACTACCACAAAACCAACCAGAGCAAAGCCGACTGCCTCGAGATGGACCCCAAAGCCCCCCGACACGTGGTGGGCAACCTGCCGCCCAACACCAACGTCAGCCTGAAGATGATCCTCACCAACCCCGAGGGACGCAAAGAGAGCGACGAGACCGTGATCCAGACGGAGGAGGATGTGCCCGGTCCGGTTCCCAAGGAGTTTGTGAGAGCGTCTCCGTCGGAGGATAAGATCTCACTGCAGTGGAAAGAGCCTCTGGAGCCCAACGGCATTATAACCCAGTATGAGATCAGCTACAGTAGTGTGCATTCGTTCGACCCGTCAGTGCCGTTGCTGCGGCCGCCCGTTTTGGTGTCTTTACCGTGGAACACGTCTCGTCACAACTTCACGCAGCTGCATCCAGGAACCACCTACCAGTTCCTGATCCGGGCCAGCACCAGCAAGGGATACGGACCCCCAACCACGCTCAACGTCACCACCAACATATCAGCGCCTACCCTAGAGGAGTATGATGGGTCGGAGGCGTCCCTGAACGAGACGGCCACCACCATCACCGTCCTGCTGAAACCTGCCCAGGCTAAAGGAGCTCCtatcagCGCCTATCAGATCGTTGTGAGGGAGATAAACCCTCACCGCTCGCGGCGGGAGGCGGGCGGCGTGGATTGTTACCGTGAGCCGGTGTCCTATCAGAACGCCGCCAGCGCGGGGCTGCCGTATTACTTCGCAGCGGAGCTCCCGCCCAGGAATCTGCCGGAACCGTTGCCGTTTACCGTCGGGGACAACAAGACTTACCATGGCTACTGGAACGCCCCCCTCGCGCCCCGCAAAAACTACAACATCTACTTCCAGGCGGTCAGCAGCGTGGAGAAGgaaAGTAAAACGCAGTGTTTGAAACTGGCTTTTAAAGgGGCCACAGAGGAGCCGGAAGTGATTCCGGACCCGGCCAAACAGACCGATCAAGTGGTGAAAATCGCCGGGATCAGCGCTGCCGTGCTGGTCTTCATTCTCCTGGTGCTCGTGGCCATCCTGCTGGTGAAGAAAAGGAGGAGCTACTATTCGTACTCATATTACCTGAAGCTCGCCAAGAAGCGCAAGGACGCCATCGGAAACACCCGTCAGGAGATGACGCACATGGTCAACTCCATGGATCGCAGTTATGCGGACCAGAGCACTCTGCACGCCGAGGAGCCCGTGTCCGTCACCTTCATGGACTCGCACAACTTCAGCAACCGCTTGCCTAATGACCCTCTCGTGCCGACAGCAGTATTAGTGCCTATCACtgACGAGAACCACACAGCAGCGGCCGAGAACAGCAGACTGCTGGACATCCCGCGCTACCACTGCGAGGGCACCGAGTCGCCCTATCAGACCGGACAGCTCCATCCCGCCATACGGGTGGCCGACCTGCTGCAGCACATCAATCTGATGAAGACCTCCGACAGCTACGGCTTCAAAGAGGAGTATGAGAGCTTCTTTGAGGGTCAGTCTGCTTCCTGGGATGCAGCAAAGAAAGAGCAAAATCGAACGAAGAATCGATACGGGAACATCATTGCATACGATCATTCTCGAGTGATCCTGCAGCCAATGGAAGACGACCCGTCCTCCGACTACATAAATGCCAACTACATTGATGGATACCAGAGGCCCAGCCATTACATCGCAACTCAAGGCCCTGTCCACGAGACGGTGTACGACTTCTGGAGGATGATCTGGCAGGAGCAGTCGGCTTGTATCGTGATGGTAACCAACCTAGTGGAGGTGAAATGCTATAAGTACTGGCCAGACGATGCTGAAGTTTACGGAGATTTCAAAGTGACGTTTGTGGAGGTCGAACCGCTCGCGGAGTACGTCGTCAGGACTTTCACGCTGGAGAGGAGGGGTTTTAATGAGGTGCGAGAGGTAAAGCAGTTCCACTTCACCGGCTGGCCCGATCACGGAGTCCCGTATCACGCTACAGGGCTGCTGTCATTCATCCGACGGGTCAAGATGTCGAACCCTCCCACCGCCGGGCCTATCGTCGTCCACTGCAGCGCGGGAGCCGGCCGGACAGGATGTTACATCGTGATCGACATCATGCTGGACATGGCCGAGAGAGAAGGGGTGGTGGACATCTACAACTGCGTCAAAGCTCTGCGCTCCAGAAGAATCAACATGGTCCAGACTGAGGAGCAGTACATTTTCATCCACGACGCCATCCTGGAGGCTTGTTTGTGTGGCGAGACTGCGATCCCCGTGTGCGAGTTCAAAGCGGCGTACTACGACATGATCCGCATCGACTCTCAGAGCAATTCCTCTCACCTCAAAGACGAGTTCCAGACGCTGAACTCAGTGACCCCTCAGCCTCAGCCCGAAGACTGCAGCATCGCACTGCTCCCTCGAAATCACGACAAGAACCGCTTCATGGACAACCTCCCGCCCGACCGCTGCCTGCCCTTCCTCATCACCATCGACGGAGAGAGCAGCAACTACATCAACGCGGCGCTCATGGATCCGTCAGAAGAATACCAGAGCTACAGGCAGCCGGCCGCGTTCATCGTGACCCAGCATCCCTTACCCAACACCGTCAAGGACTTCTGGAGGCTGGTGTACGATTATGGATGCACCTCCATCGTCATGCTGAACGAGATCGATTTGGCTCAGGGTTGTCCTCAGTACTGGCCGGAGGAGGGGATGCTAAGATACGGCCCTGTACAGGTGGACTGCATATCCTGCTCTATGGACTGTGATGTCATCAGTCGTCTTTTCAGGATATGCAACCTGACCAGGCCTCAGGAAGGTTACCTGATGGTCCGTCAGTTCCAGTACCTGGGCTGGGCGGGTCACAGGGAAGTCCCCGCCTCCAAGCGCTCGTTCCTCAAGCTCATCCTCCAGGTGGATAAATGGCAGGAGGAATGCGAGGAAGGCGATGGACGCACTATTATACACTGCCTGAACGGAGGCGGTCGCAGTGGGATGTTCTGTGCCATCAGTATTGTGTGTGAAATGATAAAGCGGCAGAATGTTGTAGACGTCTTTCATGCTGTGAAGAGTCTGAGGAACAGCAAGCCCAATATGGTGGACAGCCCGGAGCAGTACCGCTTTTGCTACGACCTGGCTCTGGAGTACATCGAGACGTCGTAATGGAGTGTTTTATTACACTCGCTTTATTTCACACGTGACATGGGGTGCGAGTGCCGTGTAAATGTCCCCATTCGTGCATCCGTGTTGACTTCCACGATATTCAAGTGCCGGCCACCCGGTCGaggtcatgtttttttaatacgaACGTTCTTTTTATCATTACGTTTTTATGATTTCACGCAGCCATTCGAAACACTAAGCCTGAGCTGTTGCATGCCGAAGACGCTCTTTATTTCTTCGTGTCTATCACTGTTCCtgttaataaacatatatagtaGTACTCGTGTAAATGGACATTGTTtcgaaagagaaaaaaaacaagcacgtTCATCCATCGATCGAGAGCGTGTGACTTTGGCTCGAGAAGACTGCGTTGCGCACTAATGGCTGGCTTATTATGTGTTCTTTCGTTTTTGGGTAGCAGATGATGACCATAAGCCAAAGACTCGTGTAAATATGTCTATAGGGATGAAGCacattgtttgtatttattgtttacttGCATTTTTGAAAGCTCAAAACAATCATTATCATTCCCCGTTTTTCACTGCAAACGCTCTTTGTAGATTTTTATGTACGAGACGgatttaagtagtttttttttttttttgtatttgaaaatggtatttcttttttcttttacatgctATCGTGGTTTGTTTTGCGTAACTGattgtgaactattcctttgccgaggagaaaagaagaagagctcTATTTTTTCGGATGTTTTCACATTTGTATTGTGCTggaaacggaaaaaaaaaaaaaaacacacacacacacacacaaacgatGAAgtgtatgcattaaaaaaatatatatacagtattagaCTCTAGTGTATTTAGGATCAAAGCCAATTTAAGAAGAAAGATGCAGCCAGTATTGATGCTGATCGGACGTTttatagaaaacaaacaaaaaatccatcatgtgaaataataagttatgtattttttgtctgtAGTTGTTGGCTGTATTACGATGTCAAATAGTACAaatactttgaataaaaaaaagatatgttaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199499 lncRNA downstream 9379 282902 ~ 286559 (-) True G135010
TU199539 lncRNA upstream 104725 533615 ~ 604306 (-) True G135035
TU199540 lncRNA upstream 176344 605234 ~ 606164 (-) True G135036
TU199573 lncRNA upstream 181852 610742 ~ 611218 (-) True G135067
TU199578 lncRNA upstream 214994 643884 ~ 647196 (-) False tmem244
TU199721 lncRNA upstream 271649 700539 ~ 709031 (-) True G135185
XM_043219452.1 mRNA downstream 135 287735 ~ 295803 (-) True themis
XM_043220066.1 mRNA upstream 22987 451877 ~ 458866 (-) True si:dkey-126h10.1
XM_043218892.1 mRNA upstream 184785 613675 ~ 638556 (-) True arhgap18
XM_043218893.1 mRNA upstream 184785 613675 ~ 638555 (-) False arhgap18
XM_043218896.1 mRNA upstream 184785 613675 ~ 638500 (-) False arhgap18
XM_043218895.1 mRNA upstream 184785 613675 ~ 637915 (-) False arhgap18
XR_006247189.1 other upstream 324677 753567 ~ 822458 (-) False epb41l2
TU199809 other upstream 509275 938165 ~ 940175 (-) True G135237
TU199808 other upstream 510283 939173 ~ 940175 (-) False G135237
TU199811 other upstream 510283 939173 ~ 965395 (-) False G135237
TU199861 other upstream 673815 1102705 ~ 1103113 (-) True G135276