RNA id: XM_043218952.1


Basic Information

Item Value
RNA id XM_043218952.1
length 4238
RNA type mRNA
GC content 0.55
exon number 25
gene id epb41l2
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 753567 ~ 822510 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGAGCCTGCCCTCaaactctctttctctttgtttccatGCACCACCCGTGACCGGGATGGATTATGGCCGTGTTGTCGTCTGGACGTCCGTTGGTCCTCCGTGTGCCGGGCGTGATGACGACAGAGGTGGGATCAGAGACAGACGTGAAGAAGGAACCGGAGAAGGTTCCCGAGGTCCAGCAGCACACAGAGCAGCCCGACAAACCCGCTGACAGCACCGCCTCGGCCAGCTCCGACCCGCCACAGGAGGAGAGCCGGAGCGCCGAGGCCGGCAGCGACCAGGAGGCGACTGCGTCTCCGGAGCCCAGCAGTCCTCCCGCCGCTGGAGGCCAGAAGAAAGACAAGGGCATCTCCCGCTTCCTGCCCCCATGGCTTAAACGACAGAAGTCCCAGAGCCAAGACAAGCCCGGCGAGAGCGCAGCGCCGCCCAAGCAGGAGAGCGAGGAGGTCGTGAAGGAGGACCAGGAGGAGACGAGCCAGCCGAAAGAGCAGGAGGAGGACGGAGGAGGTGCAGAGCACAGCGAGGAGGTGAAGGAGGCGAGAGAGGAGGTGCAGCcggaggagaaggagaaagacGAGGAGAAGTCTATCGGCAGTGCTGACACACAGCCTgtgagagaggagaaagagggcGAATCGGAGGTGAAGGAGAGCGACGAGAAGGAGGAAAAcgaggaggagaagaaagaggaagaggagaaagaggaacAGCAAGTGGTCCAGCAGGAGGCAAGTGTGCCTTCAACGCTCAAACTCAACAAGAAGATGAAGATGGTGGTGTGTCACGTGACCCTGCTGGACGGCAGCCAGTTCTCCTGTGAGGTGGAGAAACGGGCGAAAGGCCAGTACCTGTTTTTTCAGGTCTGCGATCACCTGAATCTGTTGGAGAAGGATTACTTCGGCCTGAGCTTCAAAGACAATGCTGAGCAGAGGtGCTGGCTGGACCCTACCAAGGAGATCAAGCGTCAGACCCGCAACTCTCAGTGGCAGTTTTCGTTCAGTGTGAAGTTTTACCCCCCGGACCCGTCTCAGCTGACGGAGGACATCACGAGGTATCTGCTGTGTCTCCAGCTGAGGCAGGACATCGCCTCGGGTCGGCTGCCCTGCTCCTTCGTCACACACGCTCTGCTGGGCTCCTACACCCTGCAGGCGGAGCTCGGCGACCACGACCCCGAGGAGCACCGCCTCGACTACATCTCAGACTTCCAGTTCGCCCCAAACCAGACCaaggagctggaggagaagGTGGTGGAGCTGCACAAGTCCCACAGGGGAATGACTCCGGCCCAGGCGGACGCACAGTTTCTGGAAAATGCCAAGAAGCTCTCCATGTACGGCGTAGACCTGCATCACGCCAAGGACTCTGAGGGAGTGGATATCATGCTGGGAGTGTGTGCAAACGGTTTGCTAATCTATAAGGATCGTCTGCGGATAAACCGCTTTGCTTGGCCCAAAATCCTCAAGATCTCCTACAAACGCAGTAACTTCTACATCAAGATCAGGCCAGGAGAGgccgAGCAGTTCGAGAGCACCGTCGGCTTCAAGCTCCCCAACCACAAGGCTGCCAAAAGAGTTTGGAAAGTCTGCGTTGAGCACCACACCTTCTTCAGGTTGGTTTCTCCCGAGCAGCCCACCAAGACCAAGTTCCTGACTCTAGGCTCCAAGTTCCGCTACAGCGGTAGAACGCAGGCCCAGACGCGACAGGCCAGCTCCCTCATCGACCGGCCCGCACCCTACTTCCAGCGCACCTCCAGCAAACGCATCTCACGCAGTCTTGATGGAGctcCTGTGGTGAACGTGAGCGATTACAGTCAAGCTGCAGGCGCTGGAGAGAACGGCCCGGCTCTGGAGCTCAACTCTGACTCTAAGAGTCCACAGGTGGAGGTCGTGGAGAAGCCAAACGCAGACGCGGCCACATCCATCGCCTCTGAAACGGCCTTTGAGACGGATGACGCTTCCGAGAGAAAGAGCAAGTTGAGAGTGCAGGGGGAAAATATATATGTCAGACATAGCAATTTAATGTTGGAGGACTTGGATAAGACCCAGGAGGATGTGTTGAAACATCAGGCTAGCATTAGCGAGCTAAAGCGCAGTTTTATGGAGGCTACGCCTGAGCCCAGGCCCAGTCAGTGGGACAAGCGCCTGACGGGCAGCCCTGCCACCTCCCTGCGCCTGCAGGCTCAAGGGAGTCTGGAAGAGGAGCtcacctctctctttctgagtAAGGCGTGCTTCTCTGGGCTGGCTGGCTCCTGCAGTACAGCTGCTGCTCCAGCAGAGGCCAGTCAAGGCTCAGCTCAGCCCGAGGTTCCACAGAAAAGCCCTCCCCATCCCGGGACAGACAGCAGAGACGCCAGCCAGAGCACAGAAGTTAAACCCGAAGTCAATGGCCAGCCAGAAGTCGTAGAGGTCGTGGAAGAGACCGTTGTCATCGAGGAAGTCGTCAAAGCCAAACCCAAAAGCCCCGTCCCTGAGGCGTCGTTTACCATTGAGACGGAGGTTAAGGAGGAGAGGAGTTTATCGTCGGACAGCGAGAGTGAAGAGGAGGCGGAGTACCACGCTCAGCCGCCCAGCACGAGCGTCTCCGTTCAGCAGATCAAAGAAGAGCCAGAGGAGGAGCAAGAGGCGGTGCTTACTCAACAAGCCCCGCCCCCTGCGATAGAGTCACAGCCATCGGCGGAAGCAGCTGAGCCCGAACCTGcagcagaggaagagaaagCAGCCCAGCCTCGTGAGGAAGAGCACACAGACGAGCCGCCGCTGACGCCGGATGAAGCTCCCAATGGACACGCCCCCCAACACCAAGCCCCGCCCACTCCCCAGACTGCCGCCGCTGAGGAGGAGGAGCCTCTCATCGTGAACGGCAGTGCCTCTCGCTTGGAAACGGATCACCTGCCGCAGGTTATTTGTTGTTCGGAGCCTCCTGTTGTGAAGACTGAGATGGTTACGATTTCAGACACGTTCGCTGCTCAGAAGACGGAGATATCCACTAAGGAGGTTCCCATCGTTCACACGGAAACCAAGACCATCACGTACGAGGCCGCCCAGCTGGATGGTAATGGAGACGGGGAGCCAGGCGTGCTGATGACAGCTCAAACCATCACCTCCGAGTCCCTCtgcaccaccaccaccacacaCATCACcaagACACTAAAGGGCGGGCTCTCAGAAACTCGCATCGAGAAGCGCATCGTCATCACGGGAGACTCTGACATTGATCACGATCAGGCGCTGGCCCAGGCTATAAAGGAGGCCAAAGAGCAGCACCCTGACATGTCTGTCACTCGCGTGGTGGTCCACAAAGAGACGGAGCTCGCCGAGGATGACGACTGAAGGACAGAGCTGAAGAGCGACGAGGGACACGGAGGAGACCAGAGCGGCTCTGATCCTGTACAGAAACACTTCTTCATCTTCTGTCATTCAAACCAGAACCACTTAGCTAacatttgtagcattttatttttttagtcttCGTTTTATCTCTTTCCCTCAAAAGATCGTCTTTTCCAATTCTGAGGACcagatttgttatttttattgtttagtaGTATTTCACATTCCTAGTTCACGAGGAGGAGTAATGGATCACTTTGTGGTGGAGtactgtgtaataataatagtaggaGCGTGTGAAGATGATGGGGGTGGGCTGATGAAGGGGCGGGGCTACCGATGGGTGTGTTTTCCTGATGAGGGACCGGCGCGGGACAGTGGTACTGTGTGGTTCTCATGGCAGTCATTCCTCTATGCAGTCAAACATTCCACCGAGGAGAGGACGAGCGGCttctacctctctctctctcagcggcAAGACAAACGCAAAAAACTCCACTCACCATCAAACCTAGGCAGCTCTTTGGGAACTTTCTCATTTCCAGCCATTTTCTGGCACCAATATTCAGATATGTATTTGTAGAAAcctgttgggtttttttcttctttgttttaaatcagATGATTTCGGGTCGAGGTCGCTCTGTTTGcccttttaaatctttttaatctgtttctgaaacttttgattaaatgaacaaatgagaTGATGTTTTAGGCCCGTGTTCCCTGCTCTCTCTCCCGGCTCCCATCTGCTCCATCAGCCCTGTGTATAGCAGTTAATGGTAGAAttgactctctctttcttttttaagcAGCTTTGGATGATCTGTCATGTTTTTATGCCCCACCTGACCCATTGTGTAACACTCTTccaataaaagtttgtttattcTCTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199753 lncRNA downstream 2209 764744 ~ 765234 (-) True G135202
TU199736 lncRNA downstream 35012 731886 ~ 732431 (-) True G135195
TU199721 lncRNA downstream 58412 700539 ~ 709031 (-) True G135185
TU199578 lncRNA downstream 120247 643884 ~ 647196 (-) False tmem244
TU199573 lncRNA downstream 156225 610742 ~ 611218 (-) True G135067
TU199765 lncRNA upstream 41192 863647 ~ 863882 (-) True G135214
TU199780 lncRNA upstream 94973 917428 ~ 918246 (-) True G135218
TU199802 lncRNA upstream 98990 921445 ~ 921878 (-) True G135232
TU199804 lncRNA upstream 101811 924266 ~ 924509 (-) True G135234
TU199795 lncRNA upstream 184691 1007146 ~ 1069889 (-) False G135226
XM_043219725.1 mRNA downstream 117086 643571 ~ 650357 (-) True tmem244
XM_043218892.1 mRNA downstream 128887 613675 ~ 638556 (-) True arhgap18
XM_043219169.1 mRNA upstream 45264 867719 ~ 905091 (-) False med23
XM_043219168.1 mRNA upstream 45264 867719 ~ 905091 (-) True med23
XM_043218581.1 mRNA upstream 199175 1021630 ~ 1025274 (-) False gjb7
XM_043218578.1 mRNA upstream 199175 1021630 ~ 1025274 (-) False gjb7
XM_043218580.1 mRNA upstream 199175 1021630 ~ 1025274 (-) False gjb7
TU199809 other upstream 115710 938165 ~ 940175 (-) True G135237
TU199808 other upstream 116718 939173 ~ 940175 (-) False G135237
TU199811 other upstream 116718 939173 ~ 965395 (-) False G135237
TU199861 other upstream 280250 1102705 ~ 1103113 (-) True G135276
TU199860 other upstream 280851 1103306 ~ 1105818 (-) True G135275