RNA id: XM_043219006.1


Basic Information

Item Value
RNA id XM_043219006.1
length 2091
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122324513
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15993842 ~ 16001170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatttgtgttgatttatttatttatttttttgccaggTGGATTTGATGAGAAACATTAGCACTATTCCACAGCCTTTTTTGTACACCAGACATGTTCACTTTCTCAATTTCACAAGGTTTAGGATAGAACAGCCTGTCTACATAAACATCATCAGGGATCCTATTAACCGTTTCCTCTCCAATTACTTTTTTCGTCGTTTTGGGGACTGGAGAGGAGAGCAGAATCACTTGATCCGCACACCCCAGATGAAAGATGATGAGCGATATCTGGACATTAATGTTTGCATCATGGAGAACTACCCAGAGTGTTCTAACCCACGTCTCTTTtacattgttccatacttttgtGGACAACACCCTCAGTGCAGGGAGCCGGGTGTTTGGGCTGTGGAGAGGGCCAAACAAAACGTTATAGAGAATTTCCTACTTGTGGGAAttctggaggagctggaggatgTGTTGCTCTTGCTGGAGAGACTCCTACCTCACTACTTCAGTGATGTCCTAACCATCTACAAGAGTCcagCATTCTGGAAGATGGGGAACCTTACAGGCACAGTGAAGAAGCACATGCCCACTCTAGAGGCCCTACAGGTACTTTACCAAAGGATGAAGTATGAGTATGACTTTTACAACTTCATTCGTGACCAGTTTCATCTCACTAAGAAGAAGATCGGCCTCAAGTCTGCCTCCCAAAACTCTGCTCATGAACCTGACTTTCTCCGCGAGCTCGCCCTCAGGACCCATGAGCCtttggaggaggaggaggaggaggaagaagaagaggacaTGGGGCAAGAAGATGCCAACATCTGGTTGGTTCAGCCCTGAGTAATAGCCATTGAGGTGTAGGCATGGCAGATATCTCATAAGCTTGATGTCTATGTCCAGTCAGGAGGTAGAGTCAAAAGTCCCAGGTTAAAATTGGGTGTTTAACCCCCGTTTTTAACCGGATGACCCTTCAAGACACTCTCAAGAGGAGAAGGGGGTCGCAGAAGGGTCTGGATAATTATTTAAGGAACCAACAATTGTGGCAAAACaattttgttcatctttatGAAATTTAGTTGGTTATGATCATTTCCTGGTGAGATGATTCAAGGTTGGAATTACAGGGATATTGCTTGATTGTCAGAATGGAGGGATGAACTAATTGTGGTTTAGCAGAATGAGATGCTGTGGAAGTCTGATTTTAGGCACTACTTCTGTACACTTGGTACCTGGGTGATCTCAGACTCGCGCGTCAacaacacactttcacacatgAACACATTCAGACTATGCTATGTAGGCGAGTGAGGATCACAACAACGTGCCAAACCTTCAAAGTGCCAAGGATTACTGCATCAAGCTTAGACGCTGTAGCTGTAATCACCGTAAAACAACTCAAACGCACCAATCAGATCTCTTCATCACTCGCTTCCACTTCTGGTTCCAGAAACCTGCTGCAACTCTGTGCCAgaatttcagtctttttttgaaagaatcgTTTTATGTTGTACATGTAAGATGTACAATGAATCAAAACTGTTTGAATGCCTGGAACATGTCAAATGCAGcacattgttcatttaaaatgtttgatgtaGATGTTGAACATGTTCTTGCCTTGTCAGTGTGTCATCTGTTGTGTTCAGTCGTTGCGTAAAATTGGACCCTTATGTTCTTACAGTACTTGGTACACTTTGTGCTAACAACACttaaaagtaatagttcacaCACATTGTAATACATTGTAATGATGTTTTTGTTAGCAGCAATACAATTTTATCCCATCCTGGTTTGCCTTACAGCGAATAACATAAAACTGCTGGGATATCAAATAATATCTTGCTAGTTAAAACTAAGCTATTCAAAGTTCATACTCCTCTGTCAGCGCCTAATGTTTTGAGCAGGATCACAAGCTAAAACAAGAAGACagtaatattaaactaaatgaattattttggaGGTAAAACAAATATACTCATGATCAAGAAAAATGTCACACATATTGATGAAAAAACTAATCTGACAACAGGACAAAAATATTCTTGAATGTGAAAACATGAGTTACTacactgcatttaaactcaatttatgtgtgtgtgt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205130 lncRNA downstream 746 15992543 ~ 15993096 (-) False LOC122325494
TU205007 lncRNA downstream 282789 15684176 ~ 15711053 (-) True G138862
TU204996 lncRNA downstream 476772 15516843 ~ 15517070 (-) True G138853
TU204970 lncRNA downstream 612873 15370608 ~ 15380969 (-) True G138828
TU204944 lncRNA downstream 646561 15331801 ~ 15347281 (-) True G138811
TU205173 lncRNA upstream 205900 16207070 ~ 16208001 (-) True G138956
TU205179 lncRNA upstream 213174 16214344 ~ 16216716 (-) True G138960
TU205207 lncRNA upstream 322236 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA upstream 323492 16324662 ~ 16325753 (-) False G138983
TU205285 lncRNA upstream 449356 16450526 ~ 16451893 (-) True G139029
XM_043220533.1 mRNA downstream 197 15990149 ~ 15993645 (-) True LOC122325494
XM_043219007.1 mRNA downstream 70985 15919584 ~ 15922857 (-) True LOC122324514
XM_043220492.1 mRNA downstream 148365 15842203 ~ 15845477 (-) True LOC122325442
XM_043220182.1 mRNA downstream 472059 15519210 ~ 15521783 (-) True sox11b
XM_043219875.1 mRNA downstream 541831 15438737 ~ 15452011 (-) True rnf144ab
XM_043219002.1 mRNA upstream 16148 16017318 ~ 16104722 (-) True LOC122324507
XM_043219000.1 mRNA upstream 25589 16026759 ~ 16104727 (-) False LOC122324507
XM_043218999.1 mRNA upstream 25592 16026762 ~ 16104725 (-) False LOC122324507
XM_043219001.1 mRNA upstream 25593 16026763 ~ 16104723 (-) False LOC122324507
XM_043219004.1 mRNA upstream 111922 16113092 ~ 16118444 (-) True LOC122324509
TU205127 other downstream 746 15990874 ~ 15993096 (-) False LOC122325494
XR_006247359.1 other downstream 71890 15921733 ~ 15921952 (-) True LOC122325620
XR_006247353.1 other downstream 72841 15920781 ~ 15921001 (-) True LOC122325614
XR_006247357.1 other downstream 73341 15920281 ~ 15920501 (-) True LOC122325618
XR_006247354.1 other downstream 73842 15919780 ~ 15920000 (-) True LOC122325615
TU205141 other upstream 27083 16028253 ~ 16036253 (-) False LOC122324507
TU205229 other upstream 360961 16362131 ~ 16363312 (-) False fndc1
TU205232 other upstream 363640 16364810 ~ 16365467 (-) False fndc1
TU205233 other upstream 363640 16364810 ~ 16366772 (-) False fndc1
TU205287 other upstream 454298 16455468 ~ 16462216 (-) True G139030

Expression Profile