RNA id: XM_043219025.1


Basic Information

Item Value
RNA id XM_043219025.1
length 3635
RNA type mRNA
GC content 0.48
exon number 8
gene id slain2
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11804674 ~ 11822835 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACGGCTGGTATCAGAGTTAAAGTGCGCGTTCCTGGTCCAGGGAAGGGTCGCTCCCAAAAACGTGCTCGTCCCCGTGAGTCACGTGATGACGTCTCAATTCTAGCTTCTCAAAGATTTCCCAGTAAGCGACTGGCGGACAGTAAAGATGGCGACGGAGCTTACAGTGTGTACGAGTTCCCGGCCAAGATGACGACGAGAAGATTAGTAACTTTCGAGCCGCGGCGTTGACAGCGCTCACTTTAAAGACCCTGCGGCGGAGGCTCGCGAACTTGCCGACTTTGGCGGTAGTTAAACAAATCTAGCGGACACGACACCGGCGCGCGGACATATCGTTGCTTTCGCCATGGAGGATATCAACTCAAACATAAACGCGGACTTGGAGGTGCGGAAGCTTCAAGACTTGGTGAAGAAACTCGAACAGCAGAACGAGCAGCTCCGGAGCCGATCCAGccttctctcctcctcttcttccggTGGACTGTCGGGGAACACCAGACCTGTGAGCGCCGGTTATGATTGTCCGGGAGCGGCGGCTGCGCTCGCCGGGTTCACTGGGGTGGGGTTCGGCGGATCGAGGGGCTTCGGTGGGGTATTGGAGATCTCCCGCCTGAGCCCCAGACGATCATATCACGGCAGCAGTTACGGAGGGGGTTATGACAGTGACAGCGCTTCTTGTGCAGCCGCGAACACGAGCCTCGCGTCTTATTACGATTCGCTGGATTTTATCGAAGACGGAGAAACTTCGGTGCTGGACGAGGTGGAGATTCTCGATTTGGAGGACATGGATTGCCTGAACGAAGAGGAAGACAGCTGGTTGTATGAAGCTAAATTGAACAGCCCTCTGCAGAAAGGATTGAGCCCCATTGTGTGGTGCAGACAGGCTCTGGATAACCCCAGTCCTGATATGGAGTCTGCCAAACGCTCTCTCTTACACAGACTCGACCTTACCATGTCAGcaaacaAGCGGAGGAGTCTTTACAACAATTCCTACAGTCCTCAAGTGGGCTACGGAAGCCCATACAgcacaaacacagcaaacagtcCTTACAGCAGTGGCTTTAACTCCCCGTCCTCCACTCCATCTAGAGTGCCTATCGTCAAGCAGCTCGTTCTGCCTGGCAGCGCAGGTCACCAGCGTGGATCAGCTGACAGAAACGCACAGGCAGTGAGCCCGCAGTCATCAGTAGACAGTGAGCTAAGCACATCAGAGATGGACGAAGACTCTGTCGGTTCATCGACCACATATAAACTCAATGACGTCACCGATGTGCAGATACTCGCCCGCATGCAGGAAGAGAGCTTAAGGCAAGAATATGCTGCGACAGCGTCACGTCGTAGCTCTGGTTCATCGTGTCAGTCGCTGCGACGGGGAACTCTGAGTGACCAGGAGCTGGATGCACAGAGCCTGGACGATGATGAGGAGGCGGTCCACCATTCCTACCACACACCTGTCAACCGCTTCAGCCCCTCCCCTCGGCACTCGCCCCGCGTCTCCCCCAGGAACTCGCCCAGATCCCGCTCACCCGCCCGCTCTTTAGAGTACAGCCGTGGATCTCCCCAACCAATCATCAGCCGCCTTCAGCAGCCCCGCCACTCTCTGCAAGGCCACGATACGCAGACCAATGCCATTAAGAACGAAGAGAAGCTGAGACGGAGTCTACCTAACCTCACACGATCTAGCTCTGGACCGACTGCAGAGCCGGTCAAAAACAGCAGGAGCTGTGAGTCAAACCTGCAAGTGCCAAACGGAGGATCACCCAGACACCAGAGTCAGTCTGCCATGCCCTCTTCCAGTAAATTGCGGACTCCTGCCGCCCCGTCTCCCTTGGCTCTCCGTCAGCCCATGAAGGTCATGTCTAATCATGGTTCAGGCACAGCCACGCCCACACGCTCTATGGCCCCGCCCCGCAGCGGCCTGCCACGCCCCGCCACCAATGCTGGAGGAGGTTTACCAGTGCCTCGCAGCAAACTGGTCCAGCCTGTGCGcagGTCTCTGCCAGCTCCGAGGACATACAGTGGTATCAGAGACGAGAGCTGGAGAGAGGGCTGCTACTGAGCGTGCCCAGAAAACCAGCAGCACAAAACGGGCTTTCAGTTCAACCTGGCACTTTATAGAGATACGTCTTTAACCCCCACAAATAAAGAGACCCATTCTTCCAAACAAACGATTCTGTCCTCAGTTAATGTTGCAGAGTTCTCATCCCAGCAGGATAGATGTGGAAGGCAGACTGAACGCCACAGAATgccaaagaacaaaaataaaaagactggGATTCGCCCTCACCTACCAAACAGCACCTGTACTACAAATGGCTCCAAATCCACAATCCTGCTTGCAAATGCCCTCAAAACCCACTATAGAAGAACATCAAGTAACTTGTTTCCTCTGTAACAGCATTAGTGGGGATCCCTAGTGAGCACATACAAATTGACCTTAACCTTTGGCTGGAGTGGGAAAGGTTTGTACGGAGACAAAGAGTCCACATGGCAACTGCATTCTGTCAGAATGTCTTTCATATCTATGTGAtctcttatttatttgaaatcattatttaaaatattactttcaaAGAGTATTCATACAGTATTtggtctttttaaatatatatgtttactaatctttatttttgggctttttatttctgaatgtcATTGTTAAACCTCAACTGCAAAGCTATGTTtccaaagcattttaaatgtccAAATAATGGATGCATTTCAGTCTTTGAACAAGTGTATGTAGTTTGAGCCCTCAGATACGCAGCAGGATTGATGCTTTCGCTTATTTTAAAAGACGACACAAATCAACGAGACACGAATCGGTGAAAAGTTTGTGTCAAATTTCATGGATCGTGTTTGTATGTCCCAACTGGAAATTGGGAAATTCATTGAATATAAACGCCTGAGACTTCATGAGGTGAACTGTTGTATCGTCAAACGTTGTTCATCGATCGATGTCTCGGTGGCAAAGGTCATAAAAAGATTGTGGTTGTGTGGGTGAAGTGTAGTGCTTCTGTACTAATTTTGGGAATTTCCAGGTCATGTTATTTGTCGTCATTCTCAgtgaaatatttgataaaagggcaagaaaacaaaatggcaatTGAATAGGAGTGCCACTTGAACGTATGGAGATGATATCTAGATGCACACAAGCATACTATCGAGACTGCGCAAGTTCGTTTAAAAATGAGTGCCTATAATTTATGAATTTCTGTGATTgctacaaatgttttttgttttttttagtttgtttgtgccaattgattttttttttgccaatatTATTTACTTCAGGGTTCTTTGCATTTCTTGCTCaagttttgtttgattttttgtaattgctttgataacatttatatttgcttttttgtaacaAAGATATGTTATAAAAGCCCCTTGATATTTATGACAAATACTATGCGCTGATAAGAGGCTTATTTATTAAACGGTGAGATGCCTCCGTGTGCTGAGATATAGAGTTAGTGGGATGCTTGAGCCTAGTATGGTCATGAATACATGgcatataaacattttgtggattgttttttttggtaaagaCTTTTATATCTCCACAAACATGATGCTCGGTTTCCCCCGCGTtgaatcatttcaaataaaagctgaaaaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203482 lncRNA downstream 6723 11792550 ~ 11797951 (-) True G137784
TU203514 lncRNA downstream 33014 11771269 ~ 11771660 (-) True G137812
TU203474 lncRNA downstream 53502 11717238 ~ 11751172 (-) True G137779
TU203475 lncRNA downstream 78440 11717238 ~ 11726234 (-) False G137779
TU203435 lncRNA downstream 173659 11628624 ~ 11631015 (-) True G137748
TU203524 lncRNA upstream 13283 11836106 ~ 11836716 (-) True G137821
TU203525 lncRNA upstream 15647 11838470 ~ 11839366 (-) True G137822
TU203535 lncRNA upstream 70444 11893267 ~ 11893889 (-) True G137831
TU203664 lncRNA upstream 122435 11945258 ~ 12013976 (-) True G137916
TU203678 lncRNA upstream 212655 12035478 ~ 12036122 (-) True G137930
XM_043219026.1 mRNA downstream 3150 11798020 ~ 11801524 (-) True slc10a4
XM_043219028.1 mRNA downstream 7775 11795398 ~ 11796899 (-) True zar1
XM_043218824.1 mRNA downstream 88377 11712942 ~ 11716297 (-) True ociad1
XM_043218823.1 mRNA downstream 100894 11692782 ~ 11703780 (-) True dcun1d4
XM_043219021.1 mRNA upstream 1438 11824261 ~ 11833692 (-) True anapc4
XM_043219020.1 mRNA upstream 1625 11824448 ~ 11833692 (-) False anapc4
XM_043219029.1 mRNA upstream 84737 11907560 ~ 11910735 (-) True cbr4
XM_043220525.1 mRNA upstream 236852 12059675 ~ 12064023 (-) True LOC122325482
XM_043219074.1 mRNA upstream 355077 12177900 ~ 12181346 (-) False LOC122324547
TU203468 other downstream 121356 11682405 ~ 11683318 (-) True G137773
XR_006247366.1 other downstream 174313 11630241 ~ 11630361 (-) True LOC122325627
XR_006247365.1 other downstream 174833 11629720 ~ 11629841 (-) True LOC122325626
XR_006247367.1 other downstream 175425 11629128 ~ 11629249 (-) True LOC122325628
XR_006247255.1 other downstream 436184 11366923 ~ 11368490 (-) False gsx2
TU203734 other upstream 395940 12218763 ~ 12219639 (-) True G137967
TU203715 other upstream 399987 12222810 ~ 12224270 (-) True G137949
TU203701 other upstream 423399 12246222 ~ 12247010 (-) False mdn1
XR_006247291.1 other upstream 1602652 13425475 ~ 13436351 (-) False cracd
TU204189 other upstream 1841683 13664506 ~ 13692007 (-) True G138285

Expression Profile