RNA id: XM_043219032.1


Basic Information

Item Value
RNA id XM_043219032.1
length 3788
RNA type mRNA
GC content 0.44
exon number 14
gene id fynb
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2480372 ~ 2533127 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTATGCTGCCGCTGCGCCATCACCAGCCAGCCGCTCGGAGCAGTGAATAATATCCGCTGTTTACTCACCGATGCCTGATCGCCTGTTATTCTTTACACAGTCACGGATATCTTTGTGATTGGTTTTTGTACCATGGAAAACCTTAAGACAGGACTTTAGGCTGTTATCTGGATTTGTGCTGGGAGCAGACATATGGGGCTCATCTTGCGCCGTCAGACATCGCTTTGACTGCCCCGCCTGCAATCCAGACGTCTTCTAGAGTCTATAACCCATACTGTgattctcttctgaacacaaagcaATGTGGAGGGAATAAGgattttgctgtgttttaaatacagaTCATAGAGGATGGGCTGTGTGCAATGTAAGGACAAAGAGGCTGCTAAGTTAACCGAGGACCGGGACACAAGCTTGTCTCAGAGCGGAGTAGGTTATCGGTATGGGGTTGATCCCACACCACAGCATTACCCCACCTTCAGTGGGGTCACCGGGGTCACTGCTATCCCCAACTACAATAACTTCCATGGCGCTGGGGTTACACAGGGAGTGACAGTCTTTGGAGGGGTCAACACATCCACACAGCAGGGGACGCTCCGCACACGAGGAGGCACAGGTGTGACTCTGTTTGTTGCTCTCTATGATTATGAGGCTCGTACAGAAGATGATCTCAGTTTCAGGAAAGGCGAGAAGTTTCAAATCATCAACAGCACtGAAGGTGATTGGTGGGACGCCCGTTCTCTCACTACAGGAGGAACCGGCTACATTCCCAGCAATTATGTTGCCCCTGTGGACTCAATCCAGGCTGAGGACTGGTATTTTGGAAAGTTGGGCCGAAAGGATGCAGAAAGGCAGCTGCTATCCACAGGGAACCCGCGTGGCACCTACCTGATTCGTGAGAGTGAAACCACTAAAGGTGCCTTCTCTTTGTCTATCCGGGACTGGGACGATGTAAAGGGGGACCATgtgaaacattacaaaatcCGTAAACTGGACAGTGGAGGATATTACATCACCACCAGAGCTCAGTTTGAGACTCTTCAACAGCTGGTCCAGCATTACACGGAGCGGGCAGCGGGGCTTTGCTGTCGTTTGGTCGTCCCTTGCCACAAAGGGATGCCAAGGCTCACTGACCTGTCTGTCAAAACCAAAGACGTGTGGGAGATTCCACGGGAGTCGTTGCAACTCATTAAGCGCTTAGGCAACGGCCAGTTTGGGGAGGTTTGGATGGGCACATGGAATGGCAACACTAAAGTGGCTGTGAAGACCCTCAAGCCAGGAACCATGTCTCCAGAGTCCTTCCTGGAGGAGGCACAAATCATGAAAAAATTACGACACGATAAACTAGTGCAGCTCTACGCTGTAGTTTCTGAGGAGCCCATCTACATCGTCACTGAGTATATGGGAAAAGGAAGTCTTCTAGATTTCCTGAAGGACGGGGAGGGACGGGCACTCAAGCTGCCCAACCTCGTCGACATGGCTGCCCAGGTGGCTGCAGGCATGGCCTACATTGAGCGGATGAACTACATTCACAGAGATCTGCGCTCTGCTAACATTCTGGTTGGTGATAACCTGGTGTGTAAGATCGCTGACTTTGGCCTTGCCAGACTCATTGAGGACAATGAGTACACTGCAAGACAGGGGGCAAAATTCCCTATAAAGTGGACGGCCCCTGAAGCAGCTCTGTATGGGAAGTTCACCATTAAATCTGATGTTTGGTCTTTTGGGATTCTGCTTACGGAGCTGGTCACTAAAGGCAGAGTTCCATATCCAGGGATGAACAACAGAGAGGTACTGGAACAAGTGGAACGTGGCTACCGGATGCCGTGTCCCCAGGACTGCCCGAGCTCTCTTCACGAGCTGATGGTTCAGTGCTGGAAGAAAGACGCAGAAGAGCGGCCCACCTTTGAGTACCTGCAGGCCTTCCTCGAGGATTACTTCACCGCAACCGAACCTCAATATCAGCCCGGAGACAACCTCTAAACCCAGCCTCCTGGACTCACCCCGATCTCATCCTCCCTGGGCCATCTCAAGTGGCATCGACTCCTTCTGACCGGAGGCCTGTACAACTTCATGAGTTCACCTAAGCTCCTGTTATTCCCCTGCGGCTCCACACACCCTAGTCGGCTGAAGACTGAAGTGACTGCACAGACTTTCATCTTGAGGGGTGTAAACACGAACGGGCTGGGGAGGTGAATGGGGGAATCATGGGTAAAGTTTAAAGTGGGAGGACGTTGAAAGGCTTTTATTCTGAGTTATGGCCATAACCATTATAACGATATGAAATGATGCCTGTATTCAGTGTAAATACGAGATGCTTGTTTAaggtttattttcattcaggttttttgttttcttatctctgctcatgtttttgtgttgctTTAAAGAAACTGTTTTGTTTCCATTGAGGAACCCGTTCTACATGAAGGCAGTCACCTATGAAGAGTTTAGGCGCGTGTCAAAGCATAAAACAAGAGTTGAATTTGacaatgtttgtgttttattcattttttcctcTGCTGACGAGATCACGTTCCAAATGGAGCAATAAAAATTcagtgaagaaataaaaaagtctttattattttagtggttttaaaatattttaacctgCAGAGGAAATTGATttctaacaatttttttaaattatttttttatttgctttacaTTGCTTAAGATACTAAATAGAATTGACATCCtgtccaaatgaaaaaaaatattttattttaaaaatattgtacatttttgtgtttctagCCAAATGTTAAGGACTGCCATACAGAGAACTGTGCATTGTGTTTAGTTTTCCAGCTATTAAGTATggacgttttgttttgtttagttttgttttttgatttgatttgatttaccCCATGCTTAGGCTGTGTCCAAAGCCTAAAAGACTTGTATTCGGTATTCAAAAGTTACCAAGAAATGTTTGAATTCAACATCCTGTTTTCTAGGGTTTGAAACATACTTTACACTTAAGAGGTAATGCAagcaaacatttcagaaaatgatCGGTTTTCTCTTTTAGGTCAACAACTTTCATGGTGGAGAAAAACTTTGCAGAATAAGTCAAAGGTAGCTTTGTAGGCTATTGtcagaaaaaatatacatttccaCATTTTTGGGGTACAACAGCATGTCACTATGGCAGTATCCTTAAAAGAGCCTTGTTGCTCTAAAAGGTATTGTTTTTGTATCTTAAAGtagtaatatgtaataattaatttatactaAAATGAAGGTACTGGTTTTTAGGTCTAAGTAATGTACAGAGTTGTCGTTCTGAGGATACGTTCTCTTGAATTTGTTCTTGATATCTAGACTTaacaaaattgacatttttttagaaatgtggcTTGTTAAGTCATTGACGGCGGCAAGTAAGCAAAGCAGATGTCTTTGGTTTTGGACACGGCCTCGTTGGAATCGAATCAGGTTCTGTTTGCCCTCCACGACAACTGGTCCTTATCCTCATGTGCCGATAATTCTGTTCTCCATGGagaacacttttaaaatatatttctttcagCGTATTTTATAGCATAAATCTATATGGAACTGCTTAGATTGGGGTCAAGGGAACACTCCAAAGTACCTTTTCCTTTGTTGGTTTGTATAGTGCTCATCAGAATGTCTTTAAAACCCCTCACCTGCATTTTAACAGTATTGTATGTGCCAGTTATCACCTCAAAATTGCCATTcccatttttttaacatgccattttgttaacatttcccatttggaaataaaaaatacaatattttacactCTT

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K05703 FYN; tyrosine-protein kinase Fyn

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200241 lncRNA downstream 121681 2358478 ~ 2358691 (-) True G135546
TU200237 lncRNA downstream 380131 2099996 ~ 2100241 (-) True G135542
TU200216 lncRNA downstream 466845 2005549 ~ 2013527 (-) True G135527
TU200155 lncRNA downstream 602250 1877914 ~ 1878122 (-) True G135480
TU200091 lncRNA downstream 727425 1752733 ~ 1752947 (-) True G135435
TU200345 lncRNA upstream 44005 2577132 ~ 2577488 (-) True G135627
TU200347 lncRNA upstream 46142 2579269 ~ 2579702 (-) True G135629
TU200382 lncRNA upstream 111054 2644181 ~ 2647081 (-) True G135658
TU200419 lncRNA upstream 199476 2732603 ~ 2737889 (-) True G135674
TU200443 lncRNA upstream 225970 2759097 ~ 2760884 (-) True G135691
XM_043218646.1 mRNA downstream 1558 2474871 ~ 2478814 (-) False ndufaf4
XM_043218645.1 mRNA downstream 1558 2474871 ~ 2478814 (-) True ndufaf4
XM_043218692.1 mRNA downstream 6379 2466383 ~ 2473993 (-) True gpr63
XM_043218926.1 mRNA downstream 91708 2383181 ~ 2388664 (-) True col10a1b
XM_043218927.1 mRNA downstream 101519 2367664 ~ 2378853 (-) True frk
XM_043218891.1 mRNA upstream 5510 2538637 ~ 2550699 (-) True si:dkey-119m7.4
XM_043220512.1 mRNA upstream 50940 2584067 ~ 2594796 (-) True tube1
XM_043219999.1 mRNA upstream 63285 2596412 ~ 2632143 (-) True lama4
XM_043220179.1 mRNA upstream 130651 2663778 ~ 2670855 (-) True ndufaf7
XM_043220137.1 mRNA upstream 207425 2740552 ~ 2757430 (-) False cep170bb
TU200243 other downstream 115548 2364053 ~ 2364824 (-) True G135548
unassigned_transcript_2411 other downstream 315310 2164990 ~ 2165062 (-) True trnaf-gaa_118
unassigned_transcript_2410 other downstream 315473 2164828 ~ 2164899 (-) True trnaq-cug_70
unassigned_transcript_2409 other downstream 316367 2163934 ~ 2164005 (-) True trnap-ugg_55
unassigned_transcript_2408 other downstream 316833 2163468 ~ 2163539 (-) True trnaq-cug_69
XR_006247260.1 other upstream 209649 2742776 ~ 2757430 (-) False cep170bb
XR_006247261.1 other upstream 209654 2742781 ~ 2757430 (-) False cep170bb
XR_006247236.1 other upstream 1109416 3642543 ~ 3870066 (-) False nrxn3b
XR_006247239.1 other upstream 1109420 3642547 ~ 3870066 (-) False nrxn3b
XR_006247238.1 other upstream 1109420 3642547 ~ 3870066 (-) False nrxn3b

Expression Profile