RNA id: XM_043219065.1


Basic Information

Item Value
RNA id XM_043219065.1
length 3788
RNA type mRNA
GC content 0.38
exon number 9
gene id lgals8a
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4695514 ~ 4705308 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAATGCGTCATTCTAACATGCGGAAGTGAAAGCGCTGAAAgcgttcatatttttttcttaagctGGTGATTAACTCGCAATAACAGTATATAAAGACTTTCTTTACAGCATCGTTAATATGTCTGTCGCAAACCCGAAACAAACAATAATGAATCCAACGGTTCCTTATGCTGGTACCATCCTGGGAGGACTTCAACCCGGAGAGATGGTGCTCATTCAGGGCAGTGTTCCCAGTGATTCAGACAGATTTCAGGTTGATCTGACCTGCGGGAGCAGCACGAAGCCTCGGGCAGACGTGGCCTTTCATTTCAATCCTCGCTTCAAGCGGTCTCCATACATTGTCTGTAACACCCTGCAGACGGAGCGCTGGGGGAAAGAGGAGATCCACTACTTGATGCCCTTCAGACACGGAGCTACCTTTGAGATCATCATACTCGTCCAGAAAGATTTGTTCAAgGTGGCGGTAAATGGTTCTCACCTGCTGGAGTACAGGCACAGGATAGAGCTCAAGAAGGTGGATACCATGGCTGTATCAGGAAAAGTTCAGATTCAAGCCATTGGGTTTATTCCCAGTTCAGCGAGCAAGagctcTATAACGCCTTCAAATGCAGTTGCAAGCAAAAGATCAGAGCCTCATTCAGTCATGTCGGAGTCAGGTGATATGTGTCTTCCATTTAAGAGCAAGCTTTCGAAAGGATTGAGTCCAGGAGATTCCATTATGGTGAAGGGGCAGATCTCTGGTTCCCCAGAGAGTTTCGCTGTAAACCTGCGCATCAGTAACTCGGAGGACATTGCTTTTCACCTAAACCCTCGTTTCAAAACGGGTTCCTTCATTAGAAACTCTTTCCTGTCTGGTTGTTGGGGGGTTCAGGAGACCTCCCTCCCCAGCTTTCCCCTTTCGCCCGGGCAATACTTTGAGATGATCATCCTATGTGAGGCTCAGGAGTATAAAGTGGCGGTAAATGGCTTCCACCAGCTTAATTACAAGCACCGCGTGCAGGATCTGCATTGCGTGGATGTGATCGAGATCTTGGGAGATCTAGAGCTCATGGATGTGAAGATGTGGTGAGCGCCTCCCAGCTTGATGACCATTCCTGCATTTCCTCCATTTCCTCaaattataatttgaatttGGTCTAAAATGCTAGAccaggggcctcatttataaaatgttgcgcaGAAACCATCAAAATttgatcttattttaaaatttttctgaTATGTATGTATGATTCATAGAATGAACGTGCGCCCAGATGGCTCTCTTTTAGAAGTGAAATCTATGAATCGCAAATGATCTTGAATGCAAATGAATGGTTTGCTAATTAATATCCTTAACACCTAAAATATTCCCAATCATCATAATTCAGAGCAGCGAACTGCaagaacagcttacattttcaaaaacctgcaacACTCCGACAATAAAAAGTGACGTGTCGCTGAGCACTTTTCCACATCAAAGACAGTTTTTGTGAATATGAGTGGAACTACGATCAAATCGGATCTTATACACATTGTATAAATGAGGTTCTTGGTGTGGAGTTACCCATGACTAAGATAAACCCCATTTGTTGACTATTAGTTGAGGAGATGATTTAAACTTGATCCTGAATGACAACGAGTTGATTTCATGACTTCTTCTAAACGTGGTTGCAATGGGTCAAAAAAGGTTGCAGACCCCGAATATAACAGATGGACGGAAAAAAATACCATCTGGCAGGATGTTAATGGTTGTGCGACAGTAATTTTACTGTCTGTCTAGCCATTTGTTTTCCGAATCATTCCAATCTAATTCCAGGCATTTGGAAAATTACAGATTGCAGCTTTAAATTTTACACTGTTAGGGCAAAAACAGGTCTGAAAAACACCCATCCATTAACCGTCTCAATCACGAGTATGATAATTGAAGTTGAGTTTCCTTTCTGCAAGAggtgtaatttttacattagaTGAAGAAAATTATTTGCTAATGCAAGCCTTGCACTAATGCATTCGACTTGGCATGATGGCCTTATAAATTATCAATAATCATGTAACCACTAGGTTCCAGAACTAAAGACAAGCACtttttatttgtggtttatatttattgttagcAACAGAACTATGCAACATTCCAGCAGCCTCAGTCGCTTTTTACTACTAGAAGTTTTAAGAATTATCTGgtaatttgtgaaatatatgtgtgtgtgtgtgtgcatatataatatatttaattaaaaatgtgttttgtttctctGACATCTGTTGTTCAATGCATTAAAGTTAagcaatattataaaaataataataaaaatgtaatatatatctTTTGCATTGTCTAGTAATTATGGTTGTTTTGtacattatatgtatgtatgtgtatatgtatgtatacattttaatgagacatgtaaacaaagacaatcacttttttttttaaaagttgtgaaTTTATTAACATCcacaatatttcacttttgtaGCTTAAAACCAGTAAACTGCTTTTTGGCACATAATCACATGACCGTAATGTGTTGGCACCTGGTTTAAATTTGATGCAATATATAACCAAATATATAACCAAAGCATAATTATCATAGATAATACCACTAATATCATCGACATAACCCCAGAGAGAGATAAAGGCAGTGACGTCGCGTTAAAGTTGTCTGTCTCTATCACTGTATGACCAAACATATCAGACTTCGGGACAGATGAGTTAGTGAGAGTCTGAATCACAGGCTGTACAAACAGACGAACACTGAAGTGATTCTATGCCATATCACCAGCTCAGGTAATACTACTGGAGGACCACAAATGAACAGATCACACAGGAACACTGTCCATAAGAAATGATCCCGCTTATTGGCTGACTGACAGCAAAGAAAACCGCGAAGCCCACTTCTAGAGCACAACAGTCAGCTTTCATAAGTAAAAAATCCCATTTACTTTCTCCGTAGACTAATTGAATTTTAACCCCAATAGCACGTAAACCTTTTAAGAGGCTTTTGAACTTTAAGAGATGATATGTGCTGCTGTAAAAACCATAAGTCTGTGATTTCaaggtctttttttaaaaggtatttttaataGCTGAATTCCCTTACACCATAATCTTAACTAGAAAGAAACCAATCAGAGGACTCATTGTTACTATGGAAACATAAATCACTGCAAAAGAGCTCAGCAACAATCGACCACTGCAATGCAGCACCGTGAATGAGGGAGTCacaatattttgtaatgcaGTTCAGATATATTGTTTCGTATTGAACCGTAATTCCTTATTTTGATTGCGTCGTTCACAATGCTTCATGGGACGAGCAGCTCATGCcctctttatattttttctgaagCCTGAATTTATAATGATTCATATCAGAGCTGGTTTGTTTAGTTTAAGGCTTTGATTTCCGCATTGAAGAACTTTATGAAAtctcaataaaaaaactgaacggGAAAAATACTTGAACGTAAAAGTGGGTGGCTACTGTTGTGCTCCACAGAGATGGAAGCTTATTTCTcccacagaaaaaaattattcaattaatGACTTTTGATCTTTAGAATTGCGAGTTCATATTTCGTAATTCTAATTTAGAATTCAGAATTACAAATTTCtaacaattcagatttttaattataaattgaaTTATAAACTTGgacatctcacaattcagattttttttttctacaattgCAACTTtacaaatttgatttatttttttatttttttttctaggaatCACAAGTTCAAATCTTACAgttctaacttttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200890 lncRNA downstream 249311 4445773 ~ 4446203 (-) True G136012
TU200839 lncRNA downstream 259523 4098935 ~ 4435991 (-) True G135975
TU200844 lncRNA downstream 423825 4271296 ~ 4271689 (-) True G135980
TU200842 lncRNA downstream 427935 4266524 ~ 4267579 (-) True G135978
TU200837 lncRNA downstream 611180 4083964 ~ 4084334 (-) True G135974
TU200965 lncRNA upstream 31241 4736549 ~ 4736806 (-) True G136069
TU201129 lncRNA upstream 313053 5018361 ~ 5018714 (-) False G136175
TU201132 lncRNA upstream 313053 5018361 ~ 5018866 (-) True G136175
TU201134 lncRNA upstream 328291 5033599 ~ 5033804 (-) True G136176
TU201141 lncRNA upstream 385992 5091300 ~ 5097061 (-) True G136180
XM_043219068.1 mRNA downstream 21366 4668679 ~ 4674148 (-) False tmem242
XM_043219067.1 mRNA downstream 21366 4668679 ~ 4674148 (-) True tmem242
XM_043219499.1 mRNA downstream 113417 4564356 ~ 4582097 (-) True LOC122324820
XM_043220591.1 mRNA downstream 720257 3968858 ~ 3975257 (-) False LOC122325550
XM_043220590.1 mRNA downstream 720257 3968858 ~ 3975257 (-) True LOC122325550
XM_043220022.1 mRNA upstream 144071 4849379 ~ 4881627 (-) True bcl11bb
XM_043219772.1 mRNA upstream 212499 4917807 ~ 4928160 (-) True LOC122324970
XM_043219769.1 mRNA upstream 223554 4928862 ~ 4966781 (-) True LOC122324969
XM_043219770.1 mRNA upstream 223555 4928863 ~ 4966781 (-) False LOC122324969
XM_043219514.1 mRNA upstream 267740 4973048 ~ 5010559 (-) True LOC122324828
TU200901 other downstream 122512 4564385 ~ 4573002 (-) False LOC122324820
unassigned_transcript_2443 other downstream 246059 4449383 ~ 4449455 (-) True trnat-ugu_52
unassigned_transcript_2442 other downstream 396959 4298483 ~ 4298555 (-) True trnat-ugu_51
XR_006247237.1 other downstream 825448 3642547 ~ 3870066 (-) False nrxn3b
TU201127 other upstream 306168 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 319498 5024806 ~ 5029532 (-) False selenol
TU201118 other upstream 319498 5024806 ~ 5029532 (-) False selenol
TU201119 other upstream 319498 5024806 ~ 5029532 (-) True selenol
TU201137 other upstream 465217 5170525 ~ 5284548 (-) False LOC122324433

Expression Profile