RNA id: XM_043219073.1


Basic Information

Item Value
RNA id XM_043219073.1
length 2129
RNA type mRNA
GC content 0.37
exon number 7
gene id LOC122324547
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 12177900 ~ 12181346 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGACTATAGACTGTGTCCACTGACACGTAAAACAGAGTCGGGTCATTTGTGAATGAGAACCAGTCATGAGGGACCACTTAcatcttttcatgtttttgttttgtttcagtacAGGCTGTATTGTTTCAGATGTGGACCATACAATAGATATAACCGGATACACAGGTGCTTCAGTTGTGCTGCCCTGCTCTTGTCCTGACTCTCAGTCTACAGACACAACGTTCACCTGGGAGTTTCAGCGGGGAAATCGATGGATTCAAGTATCTGAAGATGAGAAATACAGCGGCAGACTTGTGCTGTTTAATGAACATTCTCCAACAAATCTGTCTCTTCTCATTTCTGACCTCAGAATAAATGACCAGGGCTACTATAAGTGTACGACTCAAACAAATAGtgttacatttgttgaattaaaaGTTAAAGGCTGTGATTTGGTTAAGTACAGCAGGACACTAGTAGTAACTGGATATTCAGGAGAGTCTGTGGTTCTTCTCTGCTCCTGCTCTGAACTACTGGCTAAACCTCAACAGATCAAATGGGTGTATTTCATTAACAATGAATATGAAGAAATTTACCCAAATGAACAGATTGAGAATTTCAAGAACAGAGTCAAGCTGTTAAATCCAAACACTCCAGGAGATCTTTCTCTACACATATCAGCACTGACCTCAAAGGACCAAGGGCACTATCAGTGTGTCTCGTCTCAGCAAGTAAACTCCTTCAGTCTTAAAGTACTTCATGACGAAGCGACACATCAAACTTCACACCAAACACAAGACTTCACAACTTCACAACTTCTACCTACTCCACAACCATATACATCTCAACATATTTTCATTCTACTGGGAGTGTTTTTCTCATTGCTTTTACTGGCATTACTGGCATTAATATTATGGAGATGCAGAGGaagcagaaataataaaaaggtgacCGCTGATGATGTAGAgctaaagagagaaaacaatcaGgATGATGTAATGTATTCTGCTGTAGTCCATGTTAAAGCAGCATCCACACCAGCTCACGATGTCCCAGCAGAGCACACAGAGTACGCTTCGATCAACATTAAGCGCTAAAAGGACACCAGCGAGCACTGCAGAGAGATCGACTCAAGTGTATGCTTCTGAGTTTTCTGTAATCTCCGTGTGTAAAGAAACCTGTTTATTGTTTCGGACATTTTAGTGACTTTAAAGCACAAGAATGATAGCGAAGCAGAACTAAACAACTGAGGAAGCTGTCGTCTGTCTGTATTTTTAGATATGTGATCATTGACACTGTGGGCATGCTCTCAAGATATCACATGAAGTGACAACACCATAGTGTGTTGAGTTTGGTGGTTCActttaattattgattttatagtGAACAATTAATCTATGtatgtttttactcttttttttgtgctcgTAACATTTAAAGGATTAGGTCACAAAAAAATCcagataatttactcaccccacATAATCcaagatgttcatgtctttcttCAGATTAAGAACAAGGCTTTTGAGGAAAGCATTTCAAGATGTTTCTCTATACATAGTGAACTTTAATGGTGGCAAATGGATCGAAATCAAAACTGCCATTTCAATGCAGCTTTAAAGAGTCCCCAAGCTGAAATTTTGCtaaattattagtaattttctacatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaatcgaACCTTTtaaaccacaaatgcaaaatttgGACCTTGGCTACATTCTATTAAAGAATCCTGGAAcgttttcaacaaaaaaaaaaccttgtgacTAAAGAGAGAACATTGATGACACTGTGGTAAGTAAATTCAGGACATTTTCATTCTGCATGTGAACTAATTCTTTAATAACATCTTCGATGATCTTCTATTTTTGGTGGTATCCATTTCACTTTGAATGTATCTGTTGCAACTTGTGCTTAAGACtcaaaatacaatgcatttacaaacagagaaaataaaatagactttaaacctaaaaaaaaaaaagtaggatgCTTTTTTGGttattgtatctttttttaaatagcacagttcttaaaaacaaaatgaaaaagcaatcTTGTAAATTATTCATTGCTTTCCGTCTTtca

Function

GO:

id name namespace
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002376 immune system process biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203678 lncRNA downstream 141778 12035478 ~ 12036122 (-) True G137930
TU203664 lncRNA downstream 163924 11945258 ~ 12013976 (-) True G137916
TU203535 lncRNA downstream 284011 11893267 ~ 11893889 (-) True G137831
TU203525 lncRNA downstream 338534 11838470 ~ 11839366 (-) True G137822
TU203524 lncRNA downstream 341184 11836106 ~ 11836716 (-) True G137821
TU203682 lncRNA upstream 14183 12195529 ~ 12197425 (-) True G137932
TU203801 lncRNA upstream 692360 12873706 ~ 12881309 (-) True G138016
TU203836 lncRNA upstream 938193 13119539 ~ 13119773 (-) True G138042
XR_006247251.1 lncRNA upstream 1032725 13214071 ~ 13260480 (-) True LOC122325041
TU204008 lncRNA upstream 1079573 13260919 ~ 13261962 (-) False LOC122324483
XM_043220525.1 mRNA downstream 113877 12059675 ~ 12064023 (-) True LOC122325482
XM_043219029.1 mRNA downstream 267165 11907560 ~ 11910735 (-) True cbr4
XM_043219021.1 mRNA downstream 344208 11824261 ~ 11833692 (-) True anapc4
XM_043219020.1 mRNA downstream 344208 11824448 ~ 11833692 (-) False anapc4
XM_043219025.1 mRNA downstream 355077 11804674 ~ 11822823 (-) False slain2
XM_043219075.1 mRNA upstream 433 12181779 ~ 12185425 (-) True LOC122324548
XM_043219070.1 mRNA upstream 16108 12197454 ~ 12202920 (-) True katna1
XM_043220527.1 mRNA upstream 60455 12241801 ~ 12280312 (-) True mdn1
XM_043219993.1 mRNA upstream 113786 12295132 ~ 12380554 (-) False bach2b
XM_043219991.1 mRNA upstream 113786 12295132 ~ 12380553 (-) True bach2b
TU203468 other downstream 494582 11682405 ~ 11683318 (-) True G137773
XR_006247366.1 other downstream 547539 11630241 ~ 11630361 (-) True LOC122325627
XR_006247365.1 other downstream 548059 11629720 ~ 11629841 (-) True LOC122325626
XR_006247367.1 other downstream 548651 11629128 ~ 11629249 (-) True LOC122325628
XR_006247255.1 other downstream 809410 11366923 ~ 11368490 (-) False gsx2
TU203734 other upstream 37417 12218763 ~ 12219639 (-) True G137967
TU203715 other upstream 41464 12222810 ~ 12224270 (-) True G137949
TU203701 other upstream 64876 12246222 ~ 12247010 (-) False mdn1
XR_006247291.1 other upstream 1244129 13425475 ~ 13436351 (-) False cracd
TU204189 other upstream 1483160 13664506 ~ 13692007 (-) True G138285

Expression Profile