RNA id: XM_043219078.1


Basic Information

Item Value
RNA id XM_043219078.1
length 1851
RNA type mRNA
GC content 0.47
exon number 11
gene id cep57l1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16855295 ~ 16858610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGCTGTGGTCATTGTGTGTATGCGGAAACACTGAGGGCGGTAAAAGAAGAGGGAAATTTGAAACTGGGAGGCGCTGTCGGCTACAGCTGTTAACAGGACACATTCAGCTAATTCGTCTGTAACCTCGATGACTAGGCTGCATCGTTTTAGTCTTTTACGTGTAACGTAAAGTCATAATGGATCACTACAGAGACCAGACTCTGAATCTGGACTCTCCATCTAAACAGAGTTATGTTGGAAGTTTTTACCAACCTCCAGAGAAGCTGTCAAGACCTCTGTACATGGACACAGCCACAAATCCACAGGAAAGAAAGAGCTCAGGTGTGCAGGACATCAGCCCACAGTTTTATCAAACCGTACCTGATGCTGGAAGCAGAGTGATAGCTGCCCTGAAAACGCTGCAAGAGAAGATGCGACGGCTGGAGCTGGAGAGAGTTCAGGCAGAGAGGAACGTCCATCAGTTCCCTAAGACTGTTCGACATAAGTTGGATGCTTCTGTACAGAGAGGACCATGTCACAGCACACAAGAGAATCACTCTACACAGAGGAAAGAGCTGGTTTCCAAGCTTCATTCTGCAGAAACGCGCTGCTCTCTGCTGGAAAAACAGCTTGACTACATGAGGAAAATGGTGGAgtgtgcagagagagagagaatcactCGCACAGACAAAGAGGACTCTTTGTGTAGGCAAAGCACACATACAGACCAACAAATGCAGACACAACTCAACAAATTGGATAGGCTGGAAAAGGAGTATCTTAAACTTACCAGCACACAGTCAATAGCTGAGAGGAAGATTGAGCTCTTAGAGCAGAAACTTTTAGAGGAGCAACATGAACGCAAAATTATGCAGGAAAAAGCAGAGGAGTTGCAGCGAGAGCTTGAAAACAATCTCCTGTCCCTTTCTGTTGTGACTCAACCTAaaggcaagaaaaaaaagaaagaaaagggcTCTTTCAAGAAGCCCACCTCAATGAAGGTGGAGGCACCTCCCACTCCAAAGGCTAAACACCTCCCATTTGTGGCTGGAACAtctacCAGTCCGAGTCACTCAGTCAATGCCAATGTTCAGAGTGTTTTGCACATGATGAAGCACAGAAACCCCCAACTGTGTGAGAGAGTCAGTGCACTGCAGAAGTCCGTTTCTGAGAACCAGCAGACCCAGCGCAGACCTCCGTCCCCCCCCAGCAAAGCAGCTTCCACACTGGGCGGCCTTTCTGATATTCTGCTCGCCCTTCAGGATGAACTGGGACAGATGAGCTTTGAACACCAGGAGCTGGTCAAGCAAATAGACGAGACCTCTAAACGAGAGCTTCGTGATGATCTGGAGAGAGAGCTGGACTGTCTGGTCAAGAGAATGGAGGAGAAAGCAGCTCAGATCTCCAAACTGCGCAAGCATCAGCAAACGGTTCAGAAACTGTCCCAGCCATCCTGTAGCCCCAAACAAAAGCAGCAGAAGCTTCATAGGGCTGCCAGCGTAGAGGCCAAAACCAGGGCACAGAGTGGGGTACAACCACTGCCACCGTCCCCTGTCAAAGCCTCAGCCAGCACGGGGCAGAAACACAGCAGAAGCAGTCAGGAGTCTCTGAGGCTCCtcaaacagacacagaaacTGTGCTCTAGCCTCCGCAGACAGGACATTGCGTGGGAAACGTAGTTACACTTCCCTGAAACACATTTGGGGCTTATAAGTGTTACACTGGAATAATTATATTTGCCCTCAGAAGATcagaaaacactgattcatctGAAAAAACTATATGACTCTGAATGACTTTCATgagctttttaattattcatatttttatttgaataagttgtgaataaaatatatgcatatatttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205435 lncRNA downstream 10127 16843218 ~ 16845168 (-) True G139139
TU205289 lncRNA downstream 399892 16454884 ~ 16455403 (-) True G139032
TU205285 lncRNA downstream 403402 16450526 ~ 16451893 (-) True G139029
TU205207 lncRNA downstream 529542 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA downstream 529542 16324662 ~ 16325753 (-) False G138983
TU205448 lncRNA upstream 733 16859343 ~ 16860256 (-) True G139147
TU205451 lncRNA upstream 1716 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA upstream 31329 16889939 ~ 16891460 (-) True G139148
XR_006247281.1 lncRNA upstream 185037 17043647 ~ 17116946 (-) True LOC122325296
TU205685 lncRNA upstream 265276 17123886 ~ 17124259 (-) True G139300
XM_043219426.1 mRNA downstream 15233 16814705 ~ 16840062 (-) False grm1a
XM_043219423.1 mRNA downstream 15233 16814705 ~ 16840062 (-) True grm1a
XM_043219427.1 mRNA downstream 15233 16816599 ~ 16840062 (-) False grm1a
XM_043219424.1 mRNA downstream 15240 16814705 ~ 16840055 (-) False grm1a
XM_043219428.1 mRNA downstream 41151 16799760 ~ 16814144 (-) True rab32a
XM_043219285.1 mRNA upstream 37951 16896561 ~ 16911932 (-) False armc2
XM_043219284.1 mRNA upstream 37951 16896561 ~ 16911932 (-) True armc2
XM_043219287.1 mRNA upstream 63028 16921638 ~ 16947178 (-) False foxo3b
XM_043219286.1 mRNA upstream 63028 16921638 ~ 16947178 (-) True foxo3b
XM_043219290.1 mRNA upstream 90819 16949429 ~ 16970041 (-) False afg1lb
TU205287 other downstream 393079 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 488523 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 489828 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 491983 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 819042 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 488196 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 567258 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 951664 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1484862 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1547417 18406027 ~ 18446949 (-) False G139706

Expression Profile