RNA id: XM_043219097.1


Basic Information

Item Value
RNA id XM_043219097.1
length 2657
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC122324568
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17603658 ~ 17608945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGGAAGGGATGTTCCAAGCCATAGCAGAGCTCCTATATAAATGCCCCAGAGGATGATTACCAGACCAGATTCTCAAATCAGACCATTATATTAGTAGAGAAGTACACAGACGACCATTAAGAGGACCATTTTATAGTTGTACATCCATGACAATGGGCATCTTCAACAAAGTACCATTGAAATTTTTAGCTGCCATTGTTCTTATTTCTTCAGTGTTAAACTTATGGAGAGGCACTGAAGGCTGGTCATACCATTCTTCAAAAACCACTATGAACTGGGAATCTGCCAGACGCTGGTGCAGGCAGTATTACACCGACATGGTAGCCATCCAGAATAAAAAAGAGATTGACCACCTCAATGATGCTTTACCAAAAGTTCATGGATATTACTGGATTGGCATTCGTAAAATTAATGGCTCTTGGACCTGGGTGGGAACTAATAAGACACTTACAAAGGAAGCTGAAAACTGGGCATATAAAGAGCCCAATAATGGAGGGAATAATGAAGACTGTGTggaaatatacattaaaaggGAGAAAGATGAAGGAAAATGGAATGATGAGTCCTGCTTAAAGAAGAAGACTGCACTGTGCTACACAGCATCCTGTAAAGACAACTACTGTGTCAGGGGTCAAGGAGAGTGTGTCGAAACCATAAACAGCCATTACTGCTCATGCTTTGCGGGTTTCAATGGAACGCGATGTGAACACGtaataaaatgcaaaccaGAGGACGTTACCCCACCAGATCATGCTAGCGTCAAGTGCACTCATCCTTATGGCAACTTCTCATATGACTCTAAGTGTGAATATTCATGTGAAGAAGGTTATGAACTAAAGGGTTCCAGTACAAGAAGTTGCACTTCTACCACAGAGTGGTCGGGAATACCATCAACCTGTGAATTGGTTCAATGTCCAGAGTTGATCAAACCACAGAAAGGCCATATGCAGTGCCAGCATCCCACGGGACAGTTCAGATACCAATCCacctgtgtgtttatgtgtgaagAAGGATACACACTGCGAGACTGCAGCTCTTCAACACTGTCCTGTGGGGCAAAGGGAAGCTGGAATGATTCACAACCCACTTGTGAAAtaataaaatgcaaaccaGAGGACGTTACCCCACCAGATCATGCTAGCGTCAAGTGCACTCATCCTTATGGCAACTTCTCATATGACTCTAAGTGTGAATATTCATGTGAAGAAGGTTATGAACTAAAGGGCTCCAGTACAAGAAGTTGCACTTCTACCACAGAGTGGTCGGGAATACCATCAACCTGTGAACTGGTTCAATGTCCAGAGTTGATCAAACCACAGAAAGGCCATATGCAGTGTCAGCATCCCATGGGCCAGTTCAGATACCAATCCacctgtgtgtttatgtgtgaagAAGGATACACACTGCGAGACTCCAGCTCCTCAACACTGTCCTGTGGGGCAAAGGGAAGCTGGAATGATTCACAACCCACTTGTGAAAtaataaaatgcaaaccaGAAGACGTTACCCCACCAGATCATGCTAGCGTCAAGTGCACTCATCCTTATGGAAACTTCTCATATAACTCTAAGTGTGAATATTCATGTGAAGAAGGTTATGAACTAAAGGGTTCCAGTACAAGAAGTTGCACTTCTACCACTAAATGGTCAGGCAAACCACCAACCTGTGAACTTATTCACTGCCCAGCCCTTGAAAGTCCTGTCAACGGAGAACTGAGCTGCACATCCAGCTTTAATTATGGGAGCAAATGCAGCTTCAGTTGTACTGAAGGATTCAACCTCCAGGGAGCTTCAGAGATCAGCTGTACAAAAGCAGCAAAATGGGGTCAGGAACCACCTCACTGTGAAGCAGTGCTCTGCCCACAACTTTCTGAGCCAATCAACGGGCATATGAACTGCTCATCTGAAGAACCTACCTTTGGCACCTTTTGCTTGTTCAGTTGCCAGGAAGGGCACCAACTTGAAGACCACAGTAAGAAGAGAGTGATATGCAACCACAATGGGAGCTGGTCAGGGGAAGTCGCAGTGTGTCAAGCTCATCCTGATCCCACTGCATTGCTGCAAACAACAGAGGTGGCTCTTGGTGTTTCAGTTGCTACCTGCGCCTCTGGTCTAGGCGTACTCCTCTGGATATTGAAAAGACTGAGGAGAAAAGGTAAAAATTTTGAACTGAACAGtacCATGGATTTTGACGATCCTCCACAGTTTTATAAGAACAGTGTTGACAGTCTCATATAGAACAAAATAGCATCATATAGCATACAGCATATGTTCCTCATGAATATATACAGCCAGTATGTGTAATTATAGCGATGTAACTTATTCCAGTGAACAATTTAGTGAAAAACTTATTCTTACAACTGCCTCACAGTACATAAACATGTcatcaaaaatgatttaagGCACTTGTATATTTTCATGCTCAGTCTTTCAGGCATTATCAGTTACTAGCCAGAAGTCCTGAATGTGATTTGTTTCTTCCCAACGGAAGCTTTTATGATTTACTTGACTGAACATATTGTTCTGTATAAATGTACTAGTTTTTATgctattaatacataataatatctTTTTCTACTATTTATTGTTCCAAAACTGTATTGGTcctattaaactatttttacatgCCATCCATTAAAGTGTGTTTATGAGACAA

Function

GO: NA

KEGG:

id description
K06496 SELP, CD62P; selectin, platelet

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247201.1 lncRNA downstream 44188 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA downstream 44188 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA downstream 44188 17555855 ~ 17559470 (-) True LOC122324574
XR_006247186.1 lncRNA downstream 194163 17396342 ~ 17409495 (-) False LOC122324490
TU205818 lncRNA upstream 6203 17615148 ~ 17615699 (-) True G139386
TU205819 lncRNA upstream 6848 17615793 ~ 17616508 (-) True G139387
TU206133 lncRNA upstream 180253 17789198 ~ 17794072 (-) True G139565
TU206135 lncRNA upstream 186539 17795484 ~ 17799866 (-) False G139567
TU206136 lncRNA upstream 186539 17795484 ~ 17799866 (-) False G139567
XM_043219105.1 mRNA downstream 1233 17597393 ~ 17602425 (-) True LOC122324572
XM_043219098.1 mRNA downstream 7672 17586384 ~ 17595986 (-) True LOC122324570
XM_043219099.1 mRNA downstream 7672 17589697 ~ 17595986 (-) False LOC122324570
XM_043219300.1 mRNA downstream 48711 17523618 ~ 17554947 (-) False atf6
XM_043219299.1 mRNA downstream 48711 17523618 ~ 17554947 (-) True atf6
XM_043219323.1 mRNA upstream 20486 17629431 ~ 17635856 (-) True scyl3
XM_043218994.1 mRNA upstream 36033 17644978 ~ 17662064 (-) True tprb
XM_043220197.1 mRNA upstream 54557 17663502 ~ 17666366 (-) True pdcb
XM_043220196.1 mRNA upstream 70258 17679203 ~ 17682955 (-) True ptgs2b
XM_043220343.1 mRNA upstream 95973 17704918 ~ 17772741 (-) True hmcn1
TU205714 other downstream 175587 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 175587 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1141442 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1236886 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1238191 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 201329 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 734527 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 797082 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 797809 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1467101 19076046 ~ 19076118 (-) True trnaf-gaa_119