RNA id: XM_043219099.1


Basic Information

Item Value
RNA id XM_043219099.1
length 2029
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC122324570
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17586384 ~ 17595986 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCTCTCACAGTTTAGTTCCCATGCAGTGTATCAAACTGTAAATGTATTCTCAGAAATCCTTTCAGAATAAATGAAATCGCACAGTCGCAATTACGATGGTTTTGTCATCACATATTAGACTATTTGGATATCTTGTCCTTATAACTGGAAATTATGAtgTGAAAGCCTGGACTTACAATTATAGTACGAACGTTAATATGGACTGGACAACAGCTCGCCAGTGGTGTCAGGAGCGCTTCACTGATATGGTGGCCATTCAAAACCATAAAGAAGTTGAATACCTCAACCAATTTCTACCTTTCCATCCAACGTACTATTGGATTGGCATTAGGAAGATTGATGGTAACTGGACTTGGGTTGGGACAAAAAAGATCTTAGACCCTGGCGCAGAAAACTGGGCTGAAAATGAACCAAATAACAAGGGATCTGGACAAGACTGCGTAGAGATTTACATTAAGCGGAGCAAAGAAACAGCCAAGTGGAATGATGAGAAGTGCAGCAAAAAGAAAGCAACTGTCTGTTATTTAGCCTCCTGCTCAAAGGAGTCCTGCAGTGAGCATGCTGAGTGTGTGGAGAATATTGGGAGCTACGAATGTCAATGTCACCCAGGTTTTAAGGGGCCACGCTGTGAGGAAGCTGTCCAGTGTCTGGCCATTATCGATGCCCCTGGTGGTGGGAATATGAACTGCACTCACCCTTTTTCCATTAATAGCTTCAACTCCAGTTGTGAGTTCAGGTGTGAAGAGGGATTTGAGCTCAAGGGCTCAAATACAACATGGTGTGACCAGACTGGGAACTGGACACACAAACCCCCCACTTGCCAAGCTGTGGCTTGTGACCCCCTCATGACCCCTGCAAACAGTCAACTGACATGTGCTGATCCACTGGGAAAGTTCTCTTTTCGCTCTTCTTGTAACACTGCTTGTGAAGAGGGATACACACTGAGAGGAGAAACCACACTCACTTGTCAGAGTGATGGCAACTGGTCAGCACCATCACCTGCATGTGAAGTTATAAGATGTGATGCTCTGGAGTCTGTTCAGCATGGCTCTCTGCGCTGTCGGGACCACCTGGGGAAGTTCAGTTATGGTTCCCTGTGCTGGCTGGAGTGTGCAGTTGGATTTACTTTGAATGGAACTAATTCTACTTACTGCACCTTGCAAGGGAAATGGAGCCAAGAGTTTCCTGTTTGTCAAGCACTGCAGTGCAGGCCCTTAATGAACCCCTCTCGCGGCACTGTAAACTGCAGTCATCCTAATGGGCAGTTCAGCTTCGGTACAGTGTGTGAAGTAAGCTGTGAGGCAGGCTTCAAACTACATGGCACACCCCAAACAGAGTGCTTGGATATGGGAAAGTGGACCGATGCCACACCATTCTGCTTCGCTCAACAGTGCCCCCGTTTGACTGCCCCGGTCAATGGCTGGTTGAACTGTTCTCATCCTCACTCTCTGTTTAGCTTTGGCTCCCAGTGCTTCTCGGGATGTGAGCCTGGCTTTGAGATTACAGGAGAATCTAACATGGAGTGCTCTGCATCTGGGAACTGGAGTCAGGAGATGCCCTCTTGTGCTGCTGTTCGCTGTAAGCCCCTTTTACTCTTTCATCTTCCTGAGCTGGGACCTCCACCCTCGATGAACTGCTCTCACCCACATGGAAACTTCAGCTTTGGTTCTGAGTGTATGTTTCAGTGCGCCGAGAGTCAGGAGCTCAGTGGAACCAGTCAGCTCTTCTGCTCCTCCAGTGGGTCCTGGACAAACTCTCCACCCAGATGTGTTGTAAAGAAGATGTCATTGAGTACGGGCATGCTGATGTATACAGCTGTGGGAGCTGCTTCTTCAGCTGGTCTACTTCTACTTGGAGGActaatttttctgttgatgcGCCAATTCAGCAAAAAGGCTAAATACAGTCGGGCCGACTCTTTATGGAAAGAGAATTTGAACCCAATTtttgaattcaattaaaatacaaattcacaataaaaaacatgttttcttgttttttttcttgcaataaataaaacatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247201.1 lncRNA downstream 30227 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA downstream 30227 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA downstream 30227 17555855 ~ 17559470 (-) True LOC122324574
XR_006247186.1 lncRNA downstream 180202 17396342 ~ 17409495 (-) False LOC122324490
TU205818 lncRNA upstream 19162 17615148 ~ 17615699 (-) True G139386
TU205819 lncRNA upstream 19807 17615793 ~ 17616508 (-) True G139387
TU206133 lncRNA upstream 193212 17789198 ~ 17794072 (-) True G139565
TU206135 lncRNA upstream 199498 17795484 ~ 17799866 (-) False G139567
TU206136 lncRNA upstream 199498 17795484 ~ 17799866 (-) False G139567
XM_043219300.1 mRNA downstream 34750 17523618 ~ 17554947 (-) False atf6
XM_043219299.1 mRNA downstream 34750 17523618 ~ 17554947 (-) True atf6
XM_043219652.1 mRNA downstream 74217 17499479 ~ 17515480 (-) False fam102bb
XM_043219651.1 mRNA downstream 74226 17499479 ~ 17515471 (-) True fam102bb
XM_043220564.1 mRNA downstream 108163 17455737 ~ 17481534 (-) True rock2b
XM_043219105.1 mRNA upstream 1407 17597393 ~ 17602425 (-) True LOC122324572
XM_043219097.1 mRNA upstream 7672 17603658 ~ 17608945 (-) True LOC122324568
XM_043219095.1 mRNA upstream 7672 17603658 ~ 17608945 (-) False LOC122324568
XM_043219096.1 mRNA upstream 7672 17603658 ~ 17608945 (-) False LOC122324568
XM_043219323.1 mRNA upstream 33445 17629431 ~ 17635856 (-) True scyl3
TU205714 other downstream 161626 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 161626 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1127481 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1222925 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1224230 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 214288 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 747486 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 810041 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 810768 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1480060 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile