RNA id: XM_043219110.1


Basic Information

Item Value
RNA id XM_043219110.1
length 1376
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC122324579
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26101333 ~ 26103223 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCTCCACAGTGTGCCTAGCTGTTCAATCATGGCTGTAAGTTTGTTGTTGGCTGAGCTTTTAGCACTTTGTGCTCTCTGTTGTGCTTTTCCTCAGTGGAGTAATTTGCCCCAGAGTTCTCAAACTCTGATGCTTCAAAATGCTAACCAGCAGGTtaagcagccggttcaacaACAGCCACCGAGCCAGTGGGTTCagcagccggttcaacagcagccacccagccagctGGTTCAACAACCTAACCAGCAGTTTCCCCTTCAGAAGCCAGTGGCACAGACAGAGCCCATTGATAAGTGTACTGTAGCTGATTATGATCAGATCCCATGTGGACAACCTGGGATCAGTGGTGCTGAGTGTAACGCTATCAACTGCTGCTTTGATGGGCAGCAATGCTTCTATGGAAGGGCAGTGACTGTCCAGTGTATTCGAGATGGTCAGTTTGTGGTAGTGGTGGCTAGAGATGTTACTGTGCCTCAACTGAGTCTGGATTCGGTTCGTCTACTGGGTGGAAGTGACCCACCTTGTGCTCCTGTGGATTCCACACCTTCCTTTGCTATATACCAGTTCCCTGTGACCGCATGTGGCACGAGTATGATGGAGGACAGTGGATATGTGGTGTATGAGAACAGAATGACCTCCTCATACGAAGTTGGCGTTGGACCACTTGGATCCATCACGAGGGACAGTCACTTTGAGCTTCTCTTCCAGTGCAGATACTCTGGAACATCTGTGGAAGCTCTGGTTGTGGAGGTCAATTCtgttcctccacctccaccagtAGCTGCTCCTGGACCTCTCAGGGTGGAGCTCAGACTGGCCAATGGCCAGTGTGTCACCAAGGGCTGTGCTGAAGGGGATGAGGCCTACACGTCCTACTACAGTGACGCTGATTATCCCGTCACAAAAGTCCTGCGGGAGCCCGTGTATGTTGAAGTGCACATTATGGAGAGGACAGACCCCAACATTGTCCTGATGCTGGGACATTGCTGGGCCACCTCCACCTCCAGTCCACTCAGTCTGCCCCAGTGGGACCTTCTGATTGATGGATGCCCTTACCAGGATGACCGTTATCTGACCACGCTGGTTCCAGTAACTGGATCATCTGGTGTGCAGTTCCCGACCCACTACAAGCGCTTTGTTGTGAAGATGTTTACGTTTGTAGATCCAACCTCACTGGCTCCTCTGCAGGAAACGATCTTCATCCACTGCAGTACAGCGGTGTGCCATCCGTCTTCTGGCTCTTGTGAGCAAAGCTGCGCCAGGAAACGAAGAGCTATTGCTGTGACAACTGACAGTGCTGTGGTTTCTAGTGGAGAAATGAGACTGATTCCATGACtgcacaacattttaataaactattaaagaccttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210159 lncRNA downstream 10880 26088456 ~ 26090453 (-) False pgfa
TU210160 lncRNA downstream 10880 26088456 ~ 26090453 (-) False pgfa
TU210161 lncRNA downstream 10880 26088456 ~ 26090453 (-) False pgfa
TU210064 lncRNA downstream 24260 26021487 ~ 26077073 (-) True G142247
TU210059 lncRNA downstream 45768 26018719 ~ 26055565 (-) True G142242
TU210146 lncRNA upstream 46668 26149891 ~ 26159582 (-) False G142273
TU210125 lncRNA upstream 65311 26168534 ~ 26174879 (-) True G142273
TU210177 lncRNA upstream 86840 26190063 ~ 26191918 (-) True G142282
TU210174 lncRNA upstream 127083 26230306 ~ 26231483 (-) True G142280
TU210170 lncRNA upstream 128801 26232024 ~ 26232545 (-) False G142278
XM_043218801.1 mRNA downstream 4362 26088415 ~ 26096971 (-) False pgfa
XM_043218800.1 mRNA downstream 4362 26088415 ~ 26096971 (-) False pgfa
XM_043218802.1 mRNA downstream 4362 26088415 ~ 26096971 (-) False pgfa
XM_043218796.1 mRNA downstream 4362 26088415 ~ 26096971 (-) False pgfa
XM_043218798.1 mRNA downstream 4362 26088415 ~ 26096971 (-) False pgfa
XM_043219107.1 mRNA upstream 8253 26111476 ~ 26113724 (-) True LOC122324575
XM_043219109.1 mRNA upstream 20130 26123353 ~ 26125448 (-) True LOC122324578
XM_043219108.1 mRNA upstream 29337 26132560 ~ 26134793 (-) True LOC122324577
XM_043220558.1 mRNA upstream 37225 26140448 ~ 26144419 (-) True LOC122325522
XM_043220559.1 mRNA upstream 46668 26149891 ~ 26152523 (-) True LOC122325523
XR_006247174.1 other downstream 4362 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 4362 26088415 ~ 26096971 (-) True pgfa
TU210061 other downstream 46864 26050829 ~ 26054469 (-) True LOC122324466
XR_006247179.1 other downstream 46964 26052206 ~ 26054369 (-) False LOC122324466
XR_006247180.1 other downstream 46964 26052206 ~ 26054369 (-) False LOC122324466
TU210175 other upstream 82437 26185660 ~ 26187919 (-) True G142281
TU210168 other upstream 128801 26232024 ~ 26234245 (-) True G142278
unassigned_transcript_2516 other upstream 511420 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 819592 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 1126580 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile