RNA id: XM_043219114.1


Basic Information

Item Value
RNA id XM_043219114.1
length 1462
RNA type mRNA
GC content 0.48
exon number 4
gene id faslg
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7980679 ~ 7983050 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGAATGGTTTCCTGTCCGTGATGTCACTATTGCTATACCCTTTTCAGATACGTCTTGCATATTGTTTTGccacaaatgcatgcaaatgctgatacaaaaaataaatgataatccTTCCTGTGCATGAGTGTGCTtgagagaaaggaagaaaggatcagagacagagaaagagtgagatagacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacaagtGTGGGTGGGAAGTCTTAACCACACTGCAGGACCTTTTTAAAACTGATGTTCAGCACTACCTTTCTCAAGACATAGTCGCTCGTGACTCACAGATCTGAGCTCTGCAGACATGAACGGTAACTCCGGCCACCCGTCCCAGCCGGTGTTCATGGTGGATTCCGGCGGGGGTCACCCTAAACAACCTCGGTATTACCATCGGCAGATGCCCAGACACACAGAGCCGCAACTGGTGCCCTGCTGGACATTCCCCCCTGCCCGGGCCGAGACGAAGAGAAGAGGCTTGGGGAGAATGAACGCTGGGATGGCCTGGGTACTGATAATGATACTCCTGCTGGTTTTTGCAGCCCTGGGACTGGGAGCCTATCAGATCCTGAGGTTACAGAGAGAAATGGAACGGCTGTCACTGGAAATGCCCTCACGAATGCAGAGCATCGCTCCACAGAAACAAGTTGGCCTAAATCCTGCAGAGCTAAACAGGAACAAACAAAAGTCTGCTGCACACTTGATAGGTCGTGCAGACCAGAGCCCGTCCTCTGGAATTCTGAAGTGGGAATCGAAACTCGGCGAGGCCTTCACGGAAGGAGTCAAGTACATCGACGGCGGCCTTCAGGTCAACGAGACCGGTTTGTACTTCGTTTACTCCCGCGTGGAGTTTTTTTCACTCGAGTGCAACCCCAAAGATTTTTACGTTCACAAGATGAGCCTTCAGAGGAACAGCCACAACCGGACAATCATGGAAGACCACCGAGAGGGCTTCTGTTCGGTGGGGAGCGGACAGCCGTGGATGACCGGGAGTCACATCGGCTCGCTTCAGCATCTCAAGGAATCCGATCGCCTCTTTGTCAACGTCTCGCACCCCAATATGCTCAGCAAAAACTTTCACGGCAACTATTTCGGCCTCTTCAAAATCCAGTGATCGGTTGGGGATGTGGGATGTGAAGAGGCCAGCAGTCTCTGGACCACCCTGAGACCCTCAGAGCTTCGTTGCAGTGCAATCTGTCTGCTTGGCATTGTTAAATCACATTTGATTTTGAATGTATCTGTTGTTTTGGAAAGTTTTGCAGAAGAGTTTCAGACTGAGTGAACACTAATATAATTCTCTATTAGGAGAAAAGTAGATTGaatccaaatatttattttctttcaaatctgtttgtatattaatatgatCAATGGTCACATTGACTGAGCAATATATCAATAATGGTTAATAAATATGATCAATAAAAGTTGTAAGTGCA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K04389 TNFSF6, FASL, CD178; tumor necrosis factor ligand superfamily member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202090 lncRNA downstream 68115 7912148 ~ 7912564 (-) True G136804
TU202062 lncRNA downstream 87354 7890258 ~ 7893325 (-) True G136792
TU202004 lncRNA downstream 191838 7785605 ~ 7788841 (-) False zyg11
TU202019 lncRNA downstream 198446 7677116 ~ 7782233 (-) True G136763
TU202029 lncRNA downstream 208848 7669580 ~ 7771831 (-) True G136772
XR_006247275.1 lncRNA upstream 170615 8153665 ~ 8182659 (-) False LOC122325257
XR_006247276.1 lncRNA upstream 170615 8153665 ~ 8182659 (-) True LOC122325257
TU202250 lncRNA upstream 219850 8202900 ~ 8207944 (-) True G136909
TU202280 lncRNA upstream 278033 8261083 ~ 8261292 (-) True G136935
XR_006247279.1 lncRNA upstream 328441 8311491 ~ 8313967 (-) True LOC122325283
XM_043219131.1 mRNA downstream 106108 7857022 ~ 7874571 (-) True angptl1a
XM_043219292.1 mRNA downstream 181090 7785602 ~ 7799589 (-) True zyg11
XM_043219291.1 mRNA downstream 181090 7785602 ~ 7799589 (-) False zyg11
XM_043219038.1 mRNA downstream 360105 7608132 ~ 7620574 (-) True LOC122324531
XM_043219037.1 mRNA downstream 379077 7594261 ~ 7601602 (-) False LOC122324530
XM_043219116.1 mRNA upstream 2841 7985891 ~ 7992309 (-) False si:dkey-86e18.1
XM_043219115.1 mRNA upstream 3759 7986809 ~ 7992309 (-) True si:dkey-86e18.1
XM_043219112.1 mRNA upstream 9547 7992597 ~ 7996438 (-) True LOC122324580
XM_043219113.1 mRNA upstream 15541 7998591 ~ 8000531 (-) True jun
XM_043220007.1 mRNA upstream 147302 8130352 ~ 8135031 (-) True prdx6
TU202009 other downstream 284614 7693955 ~ 7696065 (-) True G136754
XR_006247193.1 other downstream 379077 7590578 ~ 7601602 (-) False LOC122324530
XR_006247310.1 other downstream 440439 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 544325 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 551411 7426669 ~ 7429268 (-) False LOC122325546
TU202297 other upstream 340063 8323113 ~ 8644759 (-) False pigc
TU202296 other upstream 348717 8331767 ~ 8644759 (-) False pigc
TU202293 other upstream 398444 8381494 ~ 8644759 (-) True pigc
TU202479 other upstream 835804 8818854 ~ 8819327 (-) True G137054
TU202481 other upstream 838104 8821154 ~ 8821719 (-) True G137056

Expression Profile