RNA id: XM_043219116.1


Basic Information

Item Value
RNA id XM_043219116.1
length 1275
RNA type mRNA
GC content 0.49
exon number 6
gene id si:dkey-86e18.1
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7985891 ~ 7992309 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTGTTGACGGAAGTGCTTTGGGAATGGCGAGAAACGAGGAGAAGCAGCTCGGAAAACTCAATCGCCTCTGGCtccagaaagagagagaggAGGGTCGCATTAAAGATGTTCACGTGTCAAGGCCAAAGCTTGGGACGTTAAACTCAGCGGCAGCGGTGAAGAAGTGGATGCCGAGCATCAAGAAGGAGATCGAGTACTATCTGCAGCAGTCGCAGTTATCTCACTACCCTGAGAGGAAGATAGACGAGTTCCGCCGGCATATTGAGGATCTGGAGACTGAATACAAACGCTTCCTCAAGAAACTACGCTCCCTGGACCCTACCTGCAAACACAAGCCTTGGGAGCCTCGAGCATATGCCAAGAGGAGGCAGGATCCAGTCAGCAATCAAAACACCTctaAAAAACTGTGCCTCCACGGCCCAAGCAGTCCTTgcagagaggaagaggatgtTAATGAGGACATAGACCCAGAGAAAGCAGGAAACCACATACCTCAGACTGTTATAATACAAGAACTACACGCCCAGTCAGCTCCCGCTACCGCCCAAGCCCCCGAGCCCCCAGACCAGGACCTCCCGCTGCGCTTCGATCAGTCCCGACTCGCCGTGGCGGTGGCCAGTTCCCGCGTGGCTCTCGCCGGGCAGCAACAAGACACAGTTTGGTAAGAGAACTAGGGCTTCGCACTGCGGCCCACGATCCGACCCCAAAACCCCTCGTACATCAGCATCAAGAACTGCTTAGCAGGCGACACTTCTGGGAAACTGAGCAAGAGCAGAGCGTTGTTGCCAAGCAGCGGCGGTGATGTCTTACTCATTCAGAATGTCTGCGTGTGACTTCTAGTGCCATTGGCTACATTTTCTCGCACGGCAGACAGGGTTTCCCATACCTGTGAGGTGAAGTATGAAAACTGATGCAACTGCTGCACACGTCCGTTATCAAAAAAGACAAAGTTTCCCTTACAGAATTTATGACAttttcagctctttttttttgtcatccatGACATTGAAATGCCTTGGAAAAGGCTTTGCTTGCGGTATACGTTTTGAACGTCCCACATCGTTACAATGACTAGTCATGACAcgtgtgtatttaaatacatatatcaATATAATCGAAACTTAGCTATTATAACTGCCTCATTGAGTTCAGTATAGATGAATTATAGCTGCTCTTAAAACTGATAATTtggtcacacttttttttacagtcctgttcctCTAGGTAACTAGGTAACATTGAACCCGCCCGAAGCTAAGCCTAACCCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202090 lncRNA downstream 73327 7912148 ~ 7912564 (-) True G136804
TU202062 lncRNA downstream 92566 7890258 ~ 7893325 (-) True G136792
TU202004 lncRNA downstream 197050 7785605 ~ 7788841 (-) False zyg11
TU202019 lncRNA downstream 203658 7677116 ~ 7782233 (-) True G136763
XR_006247275.1 lncRNA upstream 161356 8153665 ~ 8182659 (-) False LOC122325257
XR_006247276.1 lncRNA upstream 161356 8153665 ~ 8182659 (-) True LOC122325257
TU202250 lncRNA upstream 210591 8202900 ~ 8207944 (-) True G136909
TU202280 lncRNA upstream 268774 8261083 ~ 8261292 (-) True G136935
XR_006247279.1 lncRNA upstream 319182 8311491 ~ 8313967 (-) True LOC122325283
XM_043219114.1 mRNA downstream 2841 7980679 ~ 7983050 (-) True faslg
XM_043219131.1 mRNA downstream 111320 7857022 ~ 7874571 (-) True angptl1a
XM_043219292.1 mRNA downstream 186302 7785602 ~ 7799589 (-) True zyg11
XM_043219291.1 mRNA downstream 186302 7785602 ~ 7799589 (-) False zyg11
XM_043219038.1 mRNA downstream 365317 7608132 ~ 7620574 (-) True LOC122324531
XM_043219112.1 mRNA upstream 288 7992597 ~ 7996438 (-) True LOC122324580
XM_043219113.1 mRNA upstream 6282 7998591 ~ 8000531 (-) True jun
XM_043220007.1 mRNA upstream 138043 8130352 ~ 8135031 (-) True prdx6
XM_043220258.1 mRNA upstream 259143 8251452 ~ 8257991 (-) False myoc
XM_043220257.1 mRNA upstream 259143 8251452 ~ 8257991 (-) True myoc
TU202009 other downstream 289826 7693955 ~ 7696065 (-) True G136754
XR_006247193.1 other downstream 384289 7590578 ~ 7601602 (-) False LOC122324530
XR_006247310.1 other downstream 445651 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 549537 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 556623 7426669 ~ 7429268 (-) False LOC122325546
TU202297 other upstream 330804 8323113 ~ 8644759 (-) False pigc
TU202296 other upstream 339458 8331767 ~ 8644759 (-) False pigc
TU202293 other upstream 389185 8381494 ~ 8644759 (-) True pigc
TU202479 other upstream 826545 8818854 ~ 8819327 (-) True G137054
TU202481 other upstream 828845 8821154 ~ 8821719 (-) True G137056

Expression Profile