RNA id: XM_043219127.1


Basic Information

Item Value
RNA id XM_043219127.1
length 2791
RNA type mRNA
GC content 0.48
exon number 20
gene id hadhaa
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21305710 ~ 21315327 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCACGGGCTCGCGCTTGTCAGTGCCTACGCGCGCTCACGGTGTAGTTTTGAGAAGGATGGCGAGCGTGAGATTTCTGTTGACGCGGAGCGGCTGCACAGCTTTAAAAACTATCACAGGTCATGGACAGAGGAGATTCTCTGTATCGTCTGCCGTGCTGGcTCGCACTCATGTCAGCTATGAGGTCAAGGATAATGTCGCTGTGGTACGAATGAATGATCCGACCTCAAAGgtgAATACTCTTGGCAGGCACATGCAGGCAGAGCTGATGGAGGTGATGAATGAGATTTGGGGGAATTCAGCGGTAAAGAGCGCTGTCCTCATCTCCAGTAAACCAGGAAACTTCATCGCAGGAGCCGACCTCAATATGTTTCAGGCCTGCAAGACAGCAGAGGAAGTGTCATATCTGTTACGGGAAGGACAGAAGATGTTTGAGCAGATAGAGAAATCTCCCATCCCTTTTGTGGCGGCTATTAACGGCCCCTGCCTTGGTGGTGGACTGGAGTTTGCCATTGCATGTCAGTACCGCATTGCCACTAAGAGCAAGAAGACGATTCTGGGGACCCCAGAGGTGATGCTGGGACTGCTGCCCGGGGCCGGAGGGACTCAGAGGCTGCCCAAAATGgtTGGACTTCCCGCTGCGTTTGATATGATGCTGACCGGCAGGAACATAAAGGCAGAGAAAGCCAAAAAAATGGGGCTTGTCGATCAGCTGGTGGATCCTCTGGGTccaggactgaagagtccagaAGAGAGGACCGTCGACTATCTGGAGGAAGTGGCTGTTGATTTTGCTAAAGGTGTCGCTGGTAAAAACGTCAcagtgaaaaagaagaaaggacTCATGCAGAAGGTGCAGGATTTTGTAATGGACCTGCCGCCGGTTAGGAAACAGATCTACAAAACTGTCCACAATAAAGTCATGAAACAAAGTAAAGGGCTTTATCCTGCGCCATTGAAGATTATagagtGTGTTCAGACAGGCATTGAGAAAGGAAACGCTGCTGGATTTCTGGCTGAGTCAGAAAACTTTGGCAAGCTGGCGATGACATCAGTGTCCAGagctctgattggcctgttttaTGGTCAGGTGGCCTGCAAAAAGAACCACTTTGGGAAGCCAGAGAGAGAAGTGAAaaaGCTGGCTGTCCTGGGGGCGGGGCTTATGGGAGCAGGTATTGCTCAGGTAACGATAGACAAGGGTGTGGCCACCATCTTAAAAGACACAACGGAGGAAGGACTTGCCAGAGGTCAACAACAGGTGTACAAAGGCCTTCacgacaaaacaaaaaagaagagcCTGACGACATTTGAGAGAGATGGAATCATGTCGTTGCTGTCAGGACAGCTGGACTACCGTGGCTTTGAGAACGCTGACATGGTCATTGAAGCCGTGTTTGAagacctgtcaatcaaacataAAGTGGTGAAGGAGGTTGAGGCCGTGACTCCTCCTCACTGCATCTTTGCCACCAACACATCTGCTCTGCCAATCAAAGACATTGCAGCAGCCAGTAAAAGACCtgaaaagTTGATAGGGATGCACTACTTCTCTCCGGTGGATAAAATGCAACTGCTGGAAATCATCACCACCAATAAAACCTCCAAAGACACAACAGCGTCTGCCGTGGCTGTTGGCCTTAAACAGGGAAAGGTCATCATAGTCGTGGGGGATGGTCCAGGGTTTTACACCACTCGTTGTCTAGGGCCTATGTTAGCTGAGGCCATTCGAGTGCTGCAgGAAGGAGTTGGGCCCAAGAAACTGGATTCCCTGACAACAGGATTCGGGTTTCCTGTCGGCACGGCGACACTTGCTGACGAGGTCGGTATTGACGTGGCGGCTCATGTTGCAGAGGATCTTGGCAAGGCTTTTGGAACGCGATTCGGAGGAGGAAATGTTGAGGTCTTGAAGATGATGGTCCAAAAAGGGTTCAAAGGACGGAAGTCTGGAAAGGGTTGCTACATATACGAAGCAAAGTCGAAAGAAAAGAAGGTGAACTCGGCAGCTGAAGATATTCTCAAGAGCTTCAAGCTAACAGCACCCCCTGCTGTCTCTGGCGATGAGGACATTCAGTACAGACTCGTGTCCCGGTTCGTAAACGAGGCCATACTATGTCTACAGGAAGGCATTCTGCCCGAACCCGTGCAGGGAGACATCGGAGCCGTGTTTGGACTTGGCTTCCCACCATGTTTGGGAGGCCCTTTCCGTTTCGTGGATTCATATGGAGCTGACAAACTTGTCCAGAAAATGAAGCGCTTTGAAGAGGCTTATGGGAATCAGTTTACTCCCTGCCAGCTGCTCATTGACCACGCCAAAGACTCCAGCAAGAGGTTCCACAAGTGAAAATTAGCCACCGTTGTCATTTTCTGGCCTCACCGTTTGGGgttgtttaaaatgtcacatttacattatttacgcATCTTATCATTTGTGAGTTACAAAGCAGATATAACTTGGCCTGTACATAATTTGTCAGATTTTTACGTGATTAAAGAAAGGTTATGTAAAATCCCTTTTAAAATGAGGCTCAACCACATGATAAACTCTTTTTTGAAAGAATGTAACGGTAGCATATTTATTGCCATTATTAATAACATCACTTGCCTGTAGAAAAATTTCTGATTGATGCAGCTACATTTTTGTTCTAACCAGCGTGCCTCTGATTGTCTCCAGGTTCAGCTGAGACACAGACTTTtgcagttattatttatatgtaatttttgaATAGCATAATAGTGTGTATGTTTGCATATGATTCAGCTATAATAAACTTGCAACCCCTTGTCTAA

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009617 response to bacterium biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207638 lncRNA downstream 46189 21257390 ~ 21259521 (-) True G140637
TU207635 lncRNA downstream 58245 21246990 ~ 21247465 (-) True G140635
TU207614 lncRNA downstream 101741 21199816 ~ 21203969 (-) False G140616
TU207612 lncRNA downstream 103749 21200637 ~ 21201961 (-) True G140615
TU207583 lncRNA downstream 214767 21089984 ~ 21090943 (-) False nkx2.2b
TU207706 lncRNA upstream 116479 21431806 ~ 21432094 (-) True G140683
TU207710 lncRNA upstream 119617 21434944 ~ 21435469 (-) True G140687
TU207711 lncRNA upstream 120470 21435797 ~ 21436058 (-) True G140688
XR_006247184.1 lncRNA upstream 122365 21437692 ~ 21477830 (-) True LOC122324488
TU207870 lncRNA upstream 122940 21438267 ~ 21477858 (-) False LOC122324488
XM_043220543.1 mRNA downstream 31472 21265415 ~ 21274238 (-) True prdm1c
XM_043219157.1 mRNA downstream 40743 21259533 ~ 21264967 (-) False xkr5a
XM_043219158.1 mRNA downstream 40763 21259533 ~ 21264947 (-) True xkr5a
XM_043219167.1 mRNA downstream 49104 21250748 ~ 21256606 (-) True tram2
XM_043219327.1 mRNA downstream 137651 21154385 ~ 21168059 (-) True LOC122324706
XM_043219715.1 mRNA upstream 168265 21483592 ~ 21505655 (-) False lin28b
XM_043219714.1 mRNA upstream 168265 21483592 ~ 21505560 (-) True lin28b
XM_043219388.1 mRNA upstream 201452 21516779 ~ 21530446 (-) True rab10
XM_043220050.1 mRNA upstream 314943 21630270 ~ 21639546 (-) True gnpat2
XM_043220238.1 mRNA upstream 325002 21640329 ~ 21655564 (-) False lpin1b
TU207613 other downstream 26969 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 329960 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1242733 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1246107 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 1247211 20057624 ~ 20058499 (-) False G140227
TU207887 other upstream 194302 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 417219 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 525786 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 530479 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 797275 22112602 ~ 22113044 (-) True G140972

Expression Profile