RNA id: XM_043219131.1


Basic Information

Item Value
RNA id XM_043219131.1
length 2773
RNA type mRNA
GC content 0.46
exon number 6
gene id angptl1a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7857022 ~ 7874571 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAGAGTTCCTCAGTCTCCAGAAAGCAGCTGAAGGCTTCCAGAGCCATGCCACTGCCTCAGATCCCGTGAACCCTAGGACAGGAGCTAGCTACTGGGCTGAGCTGGGTCCTGGACACTGGGGATCCAATTCCACAGGAGCtttgaggaggaggaggtggccTTCAAATCCTGAGATACAAGAGATGCATGCAGCTTTAAGGACTTTTAGAGAGCCACAGGGAGAATAAGGAATCACGGAAGACGACAAGGACCGGTGGACATCAACCCGAAAACAAAGGTGAAGCATTGGATTTACCTCTCTGTGGAGGTGGAGGAAAAGAAGGGTAAACAGAAGACAGAAACTAACAAAAAGCAGGTGAGGTGATAACAGAAGCAACCATGAGAGATGTAACATGGTGCATGGGCATTATGCTCTGGCTCTCCATCTGCTTGTTCGGCAAGAGCCACTCAGGAAATGCACTCACGCAATCACGTCAACGACGAGCACCTGTCGATGACTCTAAGAAGTGCTCCTACACTTTCCTGGTGCCACAGCAGAGGATTACAGGTCCAATCTGCGCCTCTGCAACAGGGCCCGAGCCAGACAAAGACCGGGTGACACGTATGGACATTGCTGATGTCCGGGAGGTCCTATCCAAGCAGAGGCGTGAGATTGAGATGCTGCAACTAGTGGCGGATGTGGACGGGAACTTGGTAAATGAAATGAAGCTTCTGCGCAAAGAGTCTCGTAACATGAATTCCCGAGTGACACAGCTTTACATGCAGCTGCTTCATGAAATTATCCGCAAGAGGGACAACTCCCTGGAGCTGGCGCAACTGGAGAACCGTGTGCTGAACGTCACCACGGAAATGCTCCGACTGGCCTCCCGTTACAAAGAGCTGGAGCTACGTTTTGCAGGACTTGCTGCCACGGTTAACAACCAATCTGTGCTCATTGCTGCCCTGGAGGATCGTTGTCTTCATGGATATGGGCGCCAAGATCTGCCCGCAGTTCCACCGCTAGTGCAGGTGGTGCCAGAGAGCATTCCAGCAAACAATAATCGCTTCACCAATGAGATTCAgagagaccacaacaacagagcCTTTCCTAGAGGATCACGAATGGATGCCCCTACACCTGACCCACTGGGAATCCCACCACCCCCACAGGGCACCCTTACCTCAGATGGCCCATTCAGAGACTGTTTCCAGGTGCGGCAGGCAGGACACACCACCAGTGGGATGTATCTGCTGAAGGCAGAGGGCAGTGATAGACTGATTCAGGCCTGGTGCGAACATAAATTAGACAATGGAGGCTGGACCGTTTTTCAGCGAAGGAAAGATGGCTCTGTCAACTTCTTCAGGAACTGGGAAAACTATAAGAAAGGCTTTGGGAACATAGATGGAGAGCACTGGCTGGGCTTGGAGAACATCTATAATCTAGCCAAGCAAGGGGACTACAAATTGCTGGTGGAGCTGGAGGACTGGGttggaaaaaaagtgtatgCCGAGTACAGCAGCTTCCATCTGGAGTCTGAGAGCGAGGCCTTCAGGATGAGACTGGGCACCTACCAGGGCAATGCTGGAGACTCCCTCACGAGCCACAATGGAAAACCCTTCACAACGCTTGACCGGGATAAAGATGCCTTTACAGGCAACTGTGCTCATTTCCACAAAGGTGGCTGGTGGTACAACGCTTGTGGTCAAACGAATCTGAACGGTGTGTGGTACTCTGGAGGTGTGTATCGCAGCAAGTTTCAGGATGGGATCTTCTGGGCGGAGTATGGGGGTGTCTACTCGCTCAAATCAGTCCGTATGATGATCCGGCCAATAGACTGAGGTTCACCACGGGACCTCACCCTCTAACCAAATCCCCAATGAGTCTAAATTGCTTGAATGTACTCATAATTCACTTCAGCACTTATTTATAATCACACATTCATGTTTATGAGGACTGACATGTATAGCACAGTATAGACGGAGTATGCGTAAGAACTAGAAGTTGGACGACCATATGGTCAACTTCAGCATTTTCTGGTCTTTTCCAAATCCTACATTTTTCTTCACTGCTGTCCACTGCTTGAGTCTTCCTCACTACCTGGACTGATGCCATCAAATCCACAATCACgggtttttaaatcaaagatcTTCGCAACTTACCAGATTCTGGCCTCTGGCTTTGGAGGTGTCTGTAACAGTAAGGACTGGCACTGGGCTGAACCGTTCGCCATGATCGTAATGTTGGTctgtaaatatacttttttttttatatttgttcatttttgtaagAGTTAATTTAAGGACTCGCCTCCAATCCGCATtaatcatttgttatttatatatcagTGATCTGTATTTATGACAGTTATAATCCTCCAACCATCTATTATGATGTACCAATGTGCTCTGGACAAGTTTTTGTATACTTTTACCAACAGAGAGAGGCTATTATATTTGACTCCAGGGTTGTAATAACCATGGGAATTGAAAGGGACAAGTCCCCCAACATCTATTTTAAAGGTCAATaagtatacatttttcacaACTAAATCTTAAATTCAgtgttattttctttataatatgaCATTTTCAGTTGAAAGATATTCAGGCAAcatgaaggttttttttaattactgaataCCCTATGCAGCCTAAATGATGTCAGAGATGAAGTTGTTTTCGGAGTAAAATGGgcaaatcattacattttaaagattaaagattCAGAATTTAGAATGTGGcctctttttaatgaatgagtTTGAATAAACAGAAAGTGAACCGGAATTAAA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202004 lncRNA downstream 68181 7785605 ~ 7788841 (-) False zyg11
TU202019 lncRNA downstream 74789 7677116 ~ 7782233 (-) True G136763
TU202029 lncRNA downstream 85191 7669580 ~ 7771831 (-) True G136772
TU202030 lncRNA downstream 85191 7770927 ~ 7771831 (-) False G136772
TU202035 lncRNA downstream 179979 7675943 ~ 7677043 (-) True G136774
TU202062 lncRNA upstream 15687 7890258 ~ 7893325 (-) True G136792
TU202090 lncRNA upstream 37577 7912148 ~ 7912564 (-) True G136804
XR_006247275.1 lncRNA upstream 279094 8153665 ~ 8182659 (-) False LOC122325257
XR_006247276.1 lncRNA upstream 279094 8153665 ~ 8182659 (-) True LOC122325257
TU202250 lncRNA upstream 328329 8202900 ~ 8207944 (-) True G136909
XM_043219292.1 mRNA downstream 57433 7785602 ~ 7799589 (-) True zyg11
XM_043219291.1 mRNA downstream 57433 7785602 ~ 7799589 (-) False zyg11
XM_043219038.1 mRNA downstream 236448 7608132 ~ 7620574 (-) True LOC122324531
XM_043219037.1 mRNA downstream 255420 7594261 ~ 7601602 (-) False LOC122324530
XM_043220186.1 mRNA downstream 420524 7432060 ~ 7436498 (-) True LOC122325222
XM_043219114.1 mRNA upstream 106108 7980679 ~ 7983050 (-) True faslg
XM_043219116.1 mRNA upstream 111320 7985891 ~ 7992309 (-) False si:dkey-86e18.1
XM_043219115.1 mRNA upstream 112238 7986809 ~ 7992309 (-) True si:dkey-86e18.1
XM_043219112.1 mRNA upstream 118026 7992597 ~ 7996438 (-) True LOC122324580
XM_043219113.1 mRNA upstream 124020 7998591 ~ 8000531 (-) True jun
TU202009 other downstream 160957 7693955 ~ 7696065 (-) True G136754
XR_006247193.1 other downstream 255420 7590578 ~ 7601602 (-) False LOC122324530
XR_006247310.1 other downstream 316782 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 420668 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 427754 7426669 ~ 7429268 (-) False LOC122325546
TU202297 other upstream 448542 8323113 ~ 8644759 (-) False pigc
TU202296 other upstream 457196 8331767 ~ 8644759 (-) False pigc
TU202293 other upstream 506923 8381494 ~ 8644759 (-) True pigc
TU202479 other upstream 944283 8818854 ~ 8819327 (-) True G137054
TU202481 other upstream 946583 8821154 ~ 8821719 (-) True G137056

Expression Profile