RNA id: XM_043219146.1


Basic Information

Item Value
RNA id XM_043219146.1
length 3975
RNA type mRNA
GC content 0.52
exon number 8
gene id tab2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1293218 ~ 1311655 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGAAGTCTCGCGATAGGCGCTCACTTGTACGGCCGCCATATTGTGTGACACTATTTTGATTCTTATCTGTTGgaagagagaaaggaagagagaaaataagGGGGAGCCGAGGGGGAAACGCAGAAGAGCTGTCAGAAGAGAGCGAAGCAGCGGTGGCGGCGCGGGATTCTCGAGCGGAGTTGGGCCTGGTTCTGTCCGCAGATCCGCGGCGCGAGCGGCCCGGGAGCGGCGCTGACACGAAGATGCTAAGATAGTGCCTGTGAGCGAGTGCTGTGGTCAAGTCCGCTTTGTTTTGGCAGTAGACGAATGGCACAGGGAAACCAGCAGATTGACAACCAGGTTTTGCACCACCTGCGGCAAAAGTTTCCAGAGGTTCCTGAGGACGTGGTGTCCGAGTGTGTCCTGCAGAATAAGAACAATTTAGCTGCGTGTTGTGAGTACCTGACCAAGGTCAGTCCTGGTTTCTTGTATAGCGAAGGCAGCCAGGGTTCGACAGATCATCGCAATCACATGACCCAGCTTAACCTCGGCGTCTCTCAGAATACCCATGGTGCTGTGCAGCGAGATGTAGTAAGGATGAATGGCAGCAGGACTGTCACCCCCAGTGTGAGCGATGGGCCTCTGACCGTGCCGACCCCCCTCTCCGAGTTCTACCAGCCTGAAACGCCGTCTGtgccaacacacacacccacGAGCCTCGGCGCCTTCGCCGCCATGGAATCCACTCGCAAGCCTCAACCTCCTCAGCACCTGGGACTCTACCAGGTCGGGGGCAAAGGTCACGGACCGCCTCCCACCCCGCGCTTCAACCCGATCACGGTGACACTTGCACCCAACACCGGCCGCAACACACCGACCTCCCTGCACATCCACGGAGGACCTCAGTCGGGTCTAAACAGCCCAAACTCCATCTACATCCGGCCGTACGTGACCCAGCCGGGCTCCACGCGACAGGTGCAGGGCCGGGCTCAGTACAGCCCCACCTCGCAGCCCGCACAACAGATCTACCAGATCACCCACCCTGCCGCCTCCCAGAGCTCCTGGAGCGGCCAGCATCAGACCTCACACGTGTACATGCCCATCAGCTCTCCCACCAACACCCAGGCGCCCTCCATTCCCTCGGCGGTGGCCACGCAGGCCGCCTCCTGTTCGCCCTCACCTTCCTCCAGCTCGTCCTCCTTCAGCCAGTACAACATCCAGAACATCTCGACGGGGCCGAGGAAGAATCAGATTGAGATAAAGCTGGAGTCTCCTCAGAGGGTCTCGGGAGGGTCGACAGCGACGCTCCTGCGCTCCGGGTCAGCTCCGCGAGCTGCCAGCAACTCCACGTCCTCGTCCTGTCCGGCCTCGTCTTCGCTGACTGCATCCGCCGGTTCCTCCACTCCCATCTCGATCGGCGGTGCGGGGCTGAGCCGCAGCCAGCCCACAGTCTACATCTCCCCATCCCCACCCTCTGCGGACGACTGTGCCCTCGTTCCCAATCACCCTCGCACGCAGCCCAAGTTCTACATCTCTGCTGACGATGGAGGGGCGAGGAACCCGCCCACCGTCTATATCTCAGCCAATCCCGCGCTGCAGGGCTCTGCCGGTCTGCGAGCTTTGGGGAGCCAGGTGAGCATGGGCCCTGCATACATACACCACCACCCGCCCAAATCTCGGCCCTCTGTGGCTGCCGGGGGCACGGCCACATCTCCTCGCGTGGTGGTGACGCAGCCCAACACCAAATACACCTTCAAAATCACCGTCTCCCCCAACAAACCTCCGGCTGTGTCTCCCGGGGTGGTGTCGCCCACATTCGAGCCAACTAACCTGCTCAGTCTGCCGGGCGATCACCATTATGCTGAGCCGGATCCACTGTACCAGTCCGACCCGCTGTCACCTCACCGGGACAAGAGCTCGGAGCCGCGTAGGCTCAGCGTGGGTGCGGACGACGCCGCGTACACGCAAGCTCTGTTGGTGCATCAGAGAGCGCGCATGGAGCGACTGTGGCGGGAGTTAgagcagaagaagagaaagcTGGAGAAGCTGAAAGAGGAAGTCAACGAGATGGAGAATGACCTCACACGGAGACGAATGCAGCGCTCCAACTCAGTCTGTCAGATACCATCTATCGAGGAGATGCAGCAGTTGAGGTGTAAGAATAGACTTCTACAGATCGATATTGATTGTTTAACCAAAGAGATTGATCTCCTTCAAACACGAGGACCAGACTTCAATCCCATTGCAATTCATAATTTTTATGACAACCTTGGATTCTTGGGTCCTGTACCTCCTAAACCTCCCAAAGGTCCTACGAAACCAGCAGTGGATCTGGACAGGAGAGGGCGCAGGATCAATGTCAGCTCCAAGCTGAAGAGAGACCCGTCTCTCCCTCCTGTGCCTCCCTCCGacggCAGCCGCGGCGCCCGGCTCGTGTCCGAGCCCGAGGACGATGACGGGGTCCAGTGGAGCTGCACCGCCTGCACCTTCCTCAACCACCCGGCCCTCAACCGCTGTGAAGAGTGTGAATTCCCCCGGCACTTCTGAGCCACagagcgtgtgcgtgtgtgtgtgtgtgtgtgttcgtctCGTGATGTCCACTGAAGACTGGATGATGTTTACAGCTCTGTGTCtctgttcagtgtgtgtgagagatcaaGGGAACTTCCTCCGCTTGATCCGTGAAGAGGCTCGGCGTTGCCGGTGGTATTAAGACGTTTAGTACATCCACACTCGGTTTACAGGTGTGCCTTTGGACGCCAGtgtgcctttctttttttctttttttcacggGAACCCATCGTGACTGCTTTATCCACGCTGTTCCCAAAGGATCGAGGGCGGAATCTGCTAAACTCCCAGTTCTTTTGTTTGATCGATGAAATgcgaaaaaggaaaaagaaaaaaaaacctgcatgttTTAGATGTACAGTTTACAGAGGAGTCTCCGCCACACAGATTTTACTGTACATAGTTTTAGAACAAGCTTTTCTTTCTCGAGAATTCACATGTATTTCCTGTAAGTATAGCTTCATAgacttcatttatttctatgtGTTGTTTTCGTGGTGTATGGAACTTTCGCGAGAACCTAAAGGGATGCTAAAAGCGCGCAACAGAAAAAGCTCCGTCAAGCACTCTATTCAGCGTACGAGCTGCGAACGCAGCAAACCTGAACTGAAAAAGATCTAGATTTTATTAACAAGGTACTTGACCTCAGATAACAGACGCTTTCCTATGTGACAACTGGAATGTAGGTTTACTATTAGAGGAACTGATACCTTTGTGCCACGAAAGGAATGTTTCTTTGCTATGCATTGATGAAgcttgggtgtgtgtgtgtgtgttcacaagGGCTTTGACACACCGAGCCCTCGCCGCCGGCTGTCATGGGTCAGGTGTTTTAAATTGCCAAAGTGCAAGGAAATATTTCACCACGTGCCTTCGGTCTTCATGTGGTTCTCTGTTACGGATCATGGTGTGTGGCGATATGCACAGTGCCTTAACTTACAGATGTTACAGaatttacactttattattattgaactgTCATAAAGTTACAGTTTGGTGACTTTATGAGTTGATTGaactaaaacaaatgttttgtcatCCATCCTTATGAGCGTGCTAATGCATAAGTTGTGCATTGAAAAGCTGAATGAGATTGTTATTTATAAATccaataaatacacaatttccAAATGCTGGTTCTGGTATCCAGGCTAAAAATAACTTGTCTGTGGAGAACGTTTATTCGCTCGGCTCTCTGTTTCCGGCTCCAAAGACATTACTCTCTGTGCTAACGCTTGAGAAAACCAAAGAAATAATCAGATGTGTCTGTCGtgtttatggatttttaaaagaaaaggggGAGAAAATCGTTGTTTTTGATCTTAGCTGGGAAGACTGTCTTTGTAATAGATaagttatttgtaaaaaaataaaaaaaataataaaataaaataaaaatgctaaaaataaaacaagaaataaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04404 MAP3K7IP2, TAB2; TAK1-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199918 lncRNA downstream 5909 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 55058 1237960 ~ 1238160 (-) True G135297
TU199793 lncRNA downstream 163142 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 186114 1106777 ~ 1107104 (-) True G135277
TU199796 lncRNA downstream 223329 1067667 ~ 1069889 (-) True G135226
TU199938 lncRNA upstream 102148 1413803 ~ 1422222 (-) True G135339
TU199988 lncRNA upstream 241456 1553111 ~ 1555177 (-) True G135365
TU199993 lncRNA upstream 243613 1555268 ~ 1557577 (-) True G135368
TU200020 lncRNA upstream 277808 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 297893 1609548 ~ 1610205 (-) True G135384
XM_043219380.1 mRNA downstream 70202 1169796 ~ 1223016 (-) False lrfn2b
XM_043219378.1 mRNA downstream 70203 1169796 ~ 1223015 (-) True lrfn2b
XM_043219379.1 mRNA downstream 70683 1169796 ~ 1222535 (-) False lrfn2b
XM_043218775.1 mRNA downstream 128486 1162676 ~ 1164732 (-) True zgc:112001
XM_043218737.1 mRNA downstream 132837 1154064 ~ 1160381 (-) True LOC122324370
XM_043218923.1 mRNA upstream 247125 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA upstream 247125 1558780 ~ 1571698 (-) False pcmt
XM_043219143.1 mRNA upstream 282075 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 282075 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 282075 1593730 ~ 1610789 (-) False ankrd6b
TU199865 other downstream 182357 1110425 ~ 1110861 (-) True G135279
TU199860 other downstream 187400 1103306 ~ 1105818 (-) True G135275
TU199861 other downstream 190105 1102705 ~ 1103113 (-) True G135276
TU199811 other downstream 327823 939173 ~ 965395 (-) False G135237
TU199808 other downstream 353043 939173 ~ 940175 (-) False G135237
unassigned_transcript_2213 other upstream 141443 1453098 ~ 1453168 (-) True trnag-ucc_6
XR_006247319.1 other upstream 141975 1453630 ~ 1453745 (-) True LOC122325578
unassigned_transcript_2215 other upstream 143679 1455334 ~ 1455405 (-) True trnag-ucc_7
XR_006247320.1 other upstream 144208 1455863 ~ 1455978 (-) True LOC122325579
unassigned_transcript_2216 other upstream 145199 1456854 ~ 1456925 (-) True trnag-ucc_8

Expression Profile