RNA id: XM_043219158.1


Basic Information

Item Value
RNA id XM_043219158.1
length 2355
RNA type mRNA
GC content 0.54
exon number 7
gene id xkr5a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21259533 ~ 21264967 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCGTTGAGATGCCGGTAACGGAGCGGAGAGGATGCGGCGCGTGCTCGAGCTGCTGGCGCGTGCTGCTGCTCGTTGCGTCCGCGCTCGTGCTGCTGGCGGAGAGAGCGGCGCGTGAGTGACCTTATACCGCATCACAGTGGTCTGCTGTGTGGGCTTCTACCTGTGGAAGGAGGAGCTGTGTTTGGCCGGACTGACCTTTGCCCTCCTGTTGCCGGGGTCACTGGTGCAGGTGTTGAGCTTCAGGTGGTACAGGGCCGACGGAGACAACCGGACATGCCACAATTTCATCATACATACACTTCACCTGGGCATCTTAAAAAGGTTTTGGGATTGCAGTGTGTGTGAATGGACGGCTCAGGGCTCGTCGCAGTCGCATGCGCAGGAGGTGATGCAGCATGCAGACGTGTCTGCTCTGCGTCTGCTGGAGGTTTTGATGATGACTCTGCCGCAGACGCTCCTGCAGACGTACGCCCTGACCGTCACCGACTACGGCCTCTCGTCTCCAGttGCTTTATGTGGAGCCGTGTGTCTGCTCTCTCTGTCATGGGCGCTGGTGCTCTACAGCCGGGCCTGTTGTTTGATTCGTCCTGGGCATTTGCAGATGCCGCCGGCGGCTCTCCTGTGTCAGCTGCTGTGGAGGATGGGCATGTTAGCGGCCCGCTTCACCAGCCTCGCCCTGTTCACCCGCACCTTTGGCTGCTGGGTCATCGGGGTCCTGGCGTCTCATTGGTTGATGGCTGCGCTGTGGTTGGTCTCGCAGCAGACTGACATATATGTGGGTCAGTGGTCATGGCGCGTGTTTAACTTTGTTCTTGGAGGCATTcatgtgtttctgtttctcaACGTGAAGGACGGCCCGTCCCGCTTCCGGATGGCGGGATTCTACAcgGTGATGCTGCTGGAAAATGCTACTCTGCTATTGGCTGCATCTGATATCCTGACTGATGCATCATGGGATAGCTTGATCGTCCCTACTGCTGTGCTGTGTAGCTTTCTGCTCGgttTGACGTCCATGATGTTGTACTATCGTTTCCTACATCCCAAGTCTACTGAAATCTCCCTGGGTTTGCGTCAGCATGCACACATGGGCCGAGAGTGTCTTCAGCAGGGAGATTCGTCCTTCTCTCTGGGGGACAAAAGTCTTCCTCCTGCCCCTCTTCCTGTCCTTTTCCCGGCTTCTCatccctccttctctctctctgggatCCCTGGCTCTCTTTTAGAGCATCCCGGGAGCTGTGGTGTGAAGCCGGACGGAGAGTGTCGGCACCATCACTGGCTGCTCATCCGCCTCGCCCTGAAAACCGGCGACCCGGTTAAGATCAACGGGGCGTATGGGGCGGGGGGGGTGTCCGGCATACTGCTTGTGGATCGGAAGGGAGAGATGATGGAGGATGGGTGTGTGTCTACTTCGGAGAGCCGGGATGATACAATGGCGCCGCTGTCTGACTGCAGGGAGGAGTTTGAGAGCGTGAGTGAAGCCAGAGAAGAAGACGATGCCGACGACAGCCTCGAAATGGAGAGCCCGTTAGAGTCGCCCGCTTCAGAGTGCAAGCGGAGCTCGCCCGAGGGAAAGTCTGTTTTTGGGGACAGTCCCGAGCCTAATTATTGCCCCACCGAATCCAGCTCCACATTATACTTCAGCGCCGACCCACAATCTCCCAGCAGCTCCAGTAACCCGCGTCTGGACCGCGAGACGCCCTTTGGTTTCGGTTCTGGTACCGGGCTGGAAACTTTAGATGAGCTGAGCCCTATTTCCACAGACGGCGGGTTGCACCGGGATCTTGTCCGGGGGCTTCTGGGCCGAGCCGGACCCTGTTACACCTCTGCGCCCGGACTGAGCGGGCAAGGGCTTCCGGATGGTTCTGGGATGCACCTCAGGGGCCCCCGCAGGCAGGTGGTACTGTCCCGCAGGGGTCCGGAAGAGGACGCTGGCTTTTAACAGCCTATGAACAGCAGCTTTAATTTGGAGTTGTCGTCGGTTTCCAGCAGGAAAGTTGTTGCAATGTGGGCGTGTCTTTAACGACATGCAAATGAGCTTCAATGGCAACTACCAATGAGAGTGAAGATGATCTAGATGAAGAAGGTGTTAATGTTGTCTGTGAGCGTTTCActgttttgtataatttatcTCTGCCCACATTCAGCATTCAGGGATGTCATTTAAAAGATGATTGCTGTAAACTTTATCAGAAATTGTCAGCAATGAGTTTCATTCATGCAAAAATACTGTTCATGATCTGATGCAATTTCAATACTACGTCCCTTTCAGAATGTGAATTTTTAGTGGCAGGAgaacatgcatattatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207638 lncRNA downstream 12 21257390 ~ 21259521 (-) True G140637
TU207635 lncRNA downstream 12068 21246990 ~ 21247465 (-) True G140635
TU207614 lncRNA downstream 55564 21199816 ~ 21203969 (-) False G140616
TU207612 lncRNA downstream 57572 21200637 ~ 21201961 (-) True G140615
TU207583 lncRNA downstream 168590 21089984 ~ 21090943 (-) False nkx2.2b
TU207706 lncRNA upstream 166859 21431806 ~ 21432094 (-) True G140683
TU207710 lncRNA upstream 169997 21434944 ~ 21435469 (-) True G140687
TU207711 lncRNA upstream 170850 21435797 ~ 21436058 (-) True G140688
XR_006247184.1 lncRNA upstream 172745 21437692 ~ 21477830 (-) True LOC122324488
TU207870 lncRNA upstream 173320 21438267 ~ 21477858 (-) False LOC122324488
XM_043219167.1 mRNA downstream 2927 21250748 ~ 21256606 (-) True tram2
XM_043219327.1 mRNA downstream 91474 21154385 ~ 21168059 (-) True LOC122324706
XM_043220497.1 mRNA downstream 168525 21089404 ~ 21091008 (-) True nkx2.2b
XM_043219541.1 mRNA downstream 176819 21079804 ~ 21082714 (-) True nkx2.4b
XM_043219753.1 mRNA downstream 283778 20968188 ~ 20975755 (-) True crnkl1
XM_043220543.1 mRNA upstream 468 21265415 ~ 21274238 (-) True prdm1c
XM_043219127.1 mRNA upstream 40763 21305710 ~ 21315327 (-) True hadhaa
XM_043219715.1 mRNA upstream 218645 21483592 ~ 21505655 (-) False lin28b
XM_043219714.1 mRNA upstream 218645 21483592 ~ 21505560 (-) True lin28b
XM_043219388.1 mRNA upstream 251832 21516779 ~ 21530446 (-) True rab10
TU207486 other downstream 283783 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1196556 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1199930 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 1201034 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1644331 19601532 ~ 19615202 (-) False trim54
TU207887 other upstream 244682 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 467599 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 576166 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 580859 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 847655 22112602 ~ 22113044 (-) True G140972

Expression Profile