RNA id: XM_043219167.1


Basic Information

Item Value
RNA id XM_043219167.1
length 1786
RNA type mRNA
GC content 0.44
exon number 11
gene id tram2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21250748 ~ 21256606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGCTCGCTGAAGTTTGGAGTGATTCGTGGAAGTTTTAGATTtggagaagggaaaaaaagcacaGCTGAAATTCGGGAACTTGTAAAATGGCTTTTCGCAGGAGAAACAAGAGTTATCCTTTCTTCAGTCAAGAGTTTCTCATTCAGAATCACGCGGACATTGTGTTTAGTTTggtgattttcattttgattggaCTGATGTTTGAGacAACAGCGAAAACAgccattttattcattcagccTCAGTATAACATCAGCTCCTTGACCGCagatgGAGAAGTGACTCTGTATCATTATGGATGGAAAGACTGTGCTACTGTCCTCTTCTATCTTTGTATCACCATCATTCTTCATGCAGTGGTGCAGGAATATGTGCTAGATAAAGTAAACCGGCGTCTGCACCTGTCAAAGagtaaaaacacaaagtttAATGAATCCGggcagctgtgtgtgttttacctggTGTCCAGTTTATGGAGTCTCTACGTCATCGCCACAGAGGGATACATTTTGCATCCCAGTAGCCTTTGGGAGAACTATCCTCATGTTCACCTGAGGTTTCAGGTGAAGTTCTTCTACCTCACACAGCTGGCGTACTGGTTTCACGCACTACCTGAACTTTACTTCCAGAAAGTAAGGAAGgAAGAAATCCCGCGTCAGCTGCAGTATATCGGTCTTTATCTGTTGCACATTCTGGCTGCATATCTGTTAAATTTGACGCGGGTTGGGCTGGTTTTGTTGTTTCTGCAGTATCTTTCTGAGATGGGTTTCCACCTGTCTCGACTGTTTTACTTCATTGATGAAAACCACCACAAAatGTTTGAGATGTGGTCTGTCGGATTCGTCCTGACCCGGATGATCACTCTGACTCTGATGTTCCTGGCCGTGGGCTTCGGTTTGGCTCGTTCTGAAAACCAGATGCTTGATTTGGAGACGGGAAACTTCAACACTCTTTCTATCAGGCTGCTGGTGTTGTTCGTGGTGTGTTTCACTCAGTCGTGGCTGCTCTGGAAGTTCTTCCGTTTCCAGCTGAGCCGAACGCGTGAGCTGAGACTGGAGCAGGCGGCACGGAAGAGAGCGGCCGCTAAACAACACATGCAGCGCACGCTCAAACGGGATTCAGttgGTCATCATGAGAATGGACTGATTAAAGCAGAGAACGGCACATCTCCTCGTCTCAAGAAAATCAAAGCGCCGTAAACTTCAGCCCCGTTCCAGCGCATGGCCTCCACACATCGAGGGCACAGGAACAGGAAACGGTTCATCTGCCTGCTGCTTCCTGTTTCCACATCAAGAGAAGTGCATGTGGCGTTTCTCAGAGGAAGTGACGACGACACGCTCAACGGGCTCTGGTCAACGTACTAAACTTCTCTTTCCAGTTTCAGTATTCATGTtatttcttctttgtgtttctaAACTTCACTCAGTCTTTCTTTATTAAAGCGCTGTTTTGAGGTTAGTTTGTATTTCTGTATCTGCATGTCTTGAGGTACAAAAGCGGCGACGACGGTGGCCTAGGCTTGACACTCAGCGTATTGAGATGATTTGAATCTGAGGTGTTATTCTGAGACTTCACGCATTTTGGGTTTGAAATGAAGTTACATggcaatccaaaaaaaaaaatagcaaaagaaaCAATGGGAAATCATGTTGAACAAGCATTGTAGAAGAGAAATGACCCTGAACACACAACAAATTCTGTCTTGCTTTGTACGTTTATGCAGTTTGATATTTGATTGTATATGAGAATGCTTTATAAATGTTGAACCTTTTTGAATAGTTAAa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207635 lncRNA downstream 3283 21246990 ~ 21247465 (-) True G140635
TU207614 lncRNA downstream 46779 21199816 ~ 21203969 (-) False G140616
TU207612 lncRNA downstream 48787 21200637 ~ 21201961 (-) True G140615
TU207583 lncRNA downstream 159805 21089984 ~ 21090943 (-) False nkx2.2b
TU207582 lncRNA downstream 167189 21083294 ~ 21083559 (-) True G140592
TU207638 lncRNA upstream 784 21257390 ~ 21259521 (-) True G140637
TU207706 lncRNA upstream 175200 21431806 ~ 21432094 (-) True G140683
TU207710 lncRNA upstream 178338 21434944 ~ 21435469 (-) True G140687
TU207711 lncRNA upstream 179191 21435797 ~ 21436058 (-) True G140688
XR_006247184.1 lncRNA upstream 181086 21437692 ~ 21477830 (-) True LOC122324488
XM_043219327.1 mRNA downstream 82689 21154385 ~ 21168059 (-) True LOC122324706
XM_043220497.1 mRNA downstream 159740 21089404 ~ 21091008 (-) True nkx2.2b
XM_043219541.1 mRNA downstream 168034 21079804 ~ 21082714 (-) True nkx2.4b
XM_043219753.1 mRNA downstream 274993 20968188 ~ 20975755 (-) True crnkl1
XM_043218874.1 mRNA downstream 285826 20945637 ~ 20964922 (-) False cd109
XM_043219157.1 mRNA upstream 2927 21259533 ~ 21264967 (-) False xkr5a
XM_043219158.1 mRNA upstream 2927 21259533 ~ 21264947 (-) True xkr5a
XM_043220543.1 mRNA upstream 8809 21265415 ~ 21274238 (-) True prdm1c
XM_043219127.1 mRNA upstream 49104 21305710 ~ 21315327 (-) True hadhaa
XM_043219715.1 mRNA upstream 226986 21483592 ~ 21505655 (-) False lin28b
TU207486 other downstream 274998 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1187771 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1191145 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 1192249 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1635546 19601532 ~ 19615202 (-) False trim54
TU207887 other upstream 253023 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 475940 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 584507 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 589200 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 855996 22112602 ~ 22113044 (-) True G140972

Expression Profile