RNA id: XM_043219168.1


Basic Information

Item Value
RNA id XM_043219168.1
length 4507
RNA type mRNA
GC content 0.57
exon number 30
gene id med23
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 867719 ~ 905091 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGCCAGCTTCCGGTTTGCCTGCGCCGGCTCTAGTTTTGTGTTCTGTTTGCGAGAGCGTCTGAACAACGTTCAttcaaccaaacacacacacacacacacttccagcATGGACATATAAGTTTCTGAAGCCCTGTCCTGCGACCAGCTGCTCTCGACATGGCGGTGCCGATGGAAAGCCAGCTGCAGAGTATTTTTGAGGATGTAGTGAAAACTGAGGTGATTGAAGAGGCGTTTGCGGGcaTGTTTATGGACAGTCCAGAGGATGAGAGGACCAAACTCGTGAGCTGTTTAGGAGCGTTCAGGCAGTACTGGAGCTCTCTGCCTCAGGAGTCACATGATCAGTGTGTGCAGTGGATCGTCCGCTTCATCCACAGTCAGCACAGCCCCAAACGCATCTCCTTCCTCTACGACTGTCTGGCCATGGCCGTGGAGACCAGCCTGCTTCCTCCCAGAATGGTGTGTCAGGCTCTGATCAGCTCGGACAGTCTGGAGTGGGAGAGGACTCAGCTCTGGGCTTTGACCTTCAAACTCATCCGCAAAATCATCGGAGGAGTTGACTACAAGGGCGTCAGGGATCTGCTGAAGGCCGTGTTGGACAAGATTCAGACCGTCCCAAACTTCATGAGCTCGGCTGTGGTCCAGCAGCTGCTCGCAGCACGAGAAGTAGTGGAGTATATTCTGGACCGTAACGCTTGTCTGCTGCCGGCGTACTTCGCGGTGACGGAGATCAGGAAGCTGTATCCGGAGGGAGCGCTCTCACACTGGCTCTTGGGCAGCCTGATATCTGACTTTGTTGATAGTTTCAGACCGACCGCCCGGATCAACTCAATTTGCGGTCGCTGCAGTCTTCTTCCGGTGGTTAACAACTCTGGGGCCATCTGTAACTCATGGAAACTGGACCCGACCACCCTGCGCTTCCCCCTGAGGGGAATGCTGCCCTATGATAAGGACCTGTTTGAGCCGCAGACGGGTCTGTTGAGGTATGTGCTGGAGCAGCCCTACTCCAGAGACATGGTGTGCAACATGCTGGGCCTCAACAAACagACCTTGAACATTGCTCAGCACAAGCAGAGGTGTCCGGTCCTGGAGGACCAGCTGGTGGATCTGGTGGTGTACGCCATGGAGCGGTCCGAGACGGAGGAGCAGTTCGACGACGGCGGCACCAGTCAGCTCCTGTGGCAGCACCTCTCCAGCCAGCTCATCTTCTTCGTCCTGTTCCAGTTCGCCAGCTTCCCGCACATGGTGCTGTCGCTCCATCAGAAGCTGGCCGGGCGGGGTTTGATCAAAGGCAGGGATCATCTGATGTGGGTGCTCCTGCAGTTCATCTCAGGAAGCATTCAGAAGAACGCTCTGGGTGACTTCCTGCCCGTCATGAAGCTGTTTGACCTGCTGTACCCCGAGAAGGAGtgtaTTCCAGTCCCAGACATCAACAAGCCTCAATCCACGCACGCCTTCGCCATGACCTGCATCTGGATCCACCTGAACCGCAAAGCTCAGAACGACAACTCCAAGCTCCAGATCCCCATCCCACACTCGCTCAAGCTACACCACGAGTTTCTCCAGCAGAGTCTGCGCAATAAGAGTCTGCCCATGACCGACTATAAGATCGCCCTGCTGTGTAACGCGTACTCCACCAACTCCGAGTGCTTCACGCTGCCCATGGGTGTGCTGGTGGAGACCATCTACGGGAACGGCAGCATGCGCATCACTCTGCCCGGCACCAACTGCATGGCGTCCGGCTCCGTCACTCCCTTACCCATGAACCTGCTGGACTCCCTCACCGTCCACGCCAAGATGAGCTTGATTCACAGCATCGCAACCCGTGTGATTAAACTGGCCCATGCCAAATCCAGTCTGGCCCTGGCCCCAGCCTTGGTGGAGACGTACAGCCGCCTGCTGGTCTACATGGAGATCGAGTCCCTCGGCATCAAGGGCTTCATCAGTCAGCTCCTGCCGAACGTCTTCAAGTCTCACGCCTGGGGGATCCTGCACACGCTGCTGGAGATGTTCAGCTACCGCATGCACCACATTCAGCCTCACTACCGCGTGCAGCTCCTGTCACACCTCCACTCGCTCGCCGCCGTGCCACAGACCAATCAGAACCAGCTGCACCTCTGtGTGGAGAGCACCGCTCTGAGGCTCATCACGGCTCTAGGGAGTTCAGAGGTTCAGCCGCAGTTCACACGCTTCCTCAACGACCCTAAAACTGTGCTGTCTGCCGAGTCTGAGGAGCTGAACCGAGCTCTGATCCTCACGCTGGCTCGAGCCACGCACGTCACAGatTTCTTCACTGGCTCGGACTCCATTCAGGGCACCTGGTGTAAGGACATCCTGCAGACCATCATGAACTTCACTCCTCATAACTGGGCCTCTCACACACTCAGCTGCTTCCCTGCTCCGCTGCAgGCATTCTTTAAGCAGAATAACGTTCCACAGGAGAGCCGTTTTAACCTGAAGAAGAACGTAGAGGAGGAGTACAGGAAGTGGAAGTCTATGACTGTTGAGAACGACATCATCACACACTTCTCCATGCAGGGCTCTCCGCCGCTCTTCCTGTGTCTGCTGTGGAAGATGCTGCTGGAGACGGACCACATCAACCAGATCGGCTTCAGGGTGCTGGAGCGCATCGGGGCGAGGGCGCTGGTGGCCCACGTGAGGACCTTCGCAGACTTCCTAGTGTACGAGTTCAGCACGTCTGCAGGAGGACAGCAGCTCAACAAGTGCATCGAGATCCTCAACGACATGGTGTGGAAGTACAACATCGTGACTCTGGACAGACTCATCCTGTGCCTGGCGATGAGGAGTCACGAGGGGAACGAGGCTCAGGTCTGCTACTTCATCATCCAGCTGCTGCTCCTCAAACCCAACGACTTCCGCAACCGCGTCAGTGATTTCGTGAAGGAGAACGCTCCCGAGCACTGGCTGCAGAGCGACTGGCACACCAAACACATGACCTACCACAAGAAGTATCCAGAGAAGCTGTATTTCGAAGGTCTGGCAGAGCAGGTCAACCCTCCCATCCAGCTGCACTTGCAGTACCTGCCCATCTACTTCGGGAACGTGTGCCTGCGCTTCCTTCCTGTGTTTGACATCGTCATCCATCGCTTCCTGGAGCTGCTGCCTGTTTCCAAGTCTCTGGAGACGCTGCTCGATCACCTGGGGGGGCTCTACAAGTTCCACGATCGTCCGGTGACGTACCTGTACAACACGCTGCACTATTACGAGAGACACCTGCGAGACCGCACCAACCTGAAGAGGAAGCTGGTCCACGCCATCATGAGCTCTCTGAAGGACAACCGCACGCCCGGCTGGTGTCTCAGCGAGACCTACCTGAAGTGTGGCATGAACCCCCGAGACGACAACGTCTGGATCCCCGACGACACCTACTACTGCAAACTCATCGGCCGGCTCGTGGACACCATGGCAGGTAAATCTCCAGGGCCGTTCCCCAACTGTGACTGGCGGTTCAACGAGTTTCCGAACCCGGCCGCTCACGCGCTGCACGTCACCTGCGTGGAGCTGATGGCTCTGGCTGTGCCGGGGAAAGACGTGGGCAACGCTCTGCTCAATGTCGTGCTCAAGAGTCAGCCGCTGGTTCCTCGGGAGAACATCACGGCGTGGATGAACGCTATCGGACTGGTCATCACGGCTCTGCCGGAGCCGTACTGGATCGTTCTTCACGACCGTATCGTGAGCGTGGTCAGCAGTCCGGTCCTGAGCTCGGGCACCGAGTGGCTGGGTTACCCGTTCCAGCTGCTGGACTTCACGGCCTGTCACCGCTCGTACTCGGAGATGCACTGCAGCTACGTCCTGGCGCTGGCCCACGCCGTCTGGCATCACTCCAGCATCGGACAGCTCTCCCTCATTCCCAAgttcCTCTCAGAGGTGCTGAAGCCCATTGTGAAGACGGAGTTCCAGCTGCTGTATGTCTATCACCTGGTGGGGCCGTTTCTACAGCGCTTCCAGCAGGAGAGGACCAGATGCATGCTGGAGATTGGAGTGGCGTTTTATGAGATGCTTCAGGCTGTGGACCAGCACACTAAACACCTGGCCTACATGGACCCCATCTGTGACTTCCTGTACCACATCAAATACATGTTTACTGGGGACAGCGTCAAAGACCaggTGGAGCGGATCATCTGTTCTCTGAGGCCGGCCATGCGTCTCCGTCTGCGCTTCATCACTCACATCAGTAAGATGGAGCCGGCGGCAGCGCTGACCTCGGCCCCCCAGTCCAGCGGCGTCTCGTCCCCCGCGGCCCCCAGCGGCCCCGGGCCCTCCAGCATCCCTCTGTCTGCGGCTCAGTGAGCAGCTGCGGccctctgaacacacacacagctgctgacCTCAGCCGGACCGGACGGACAGCCATGAACCTGAGCGGGGGTTTATTATCAAGACTCTTCCTGAAGTCTTCAGCATGGACTTcgaactgtttttttatttttattgaatcatGTCTCATTTTTTCACATGGAATAAAGACTAATCATGCGTTATCAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15166 MED23; mediator of RNA polymerase II transcription subunit 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199765 lncRNA downstream 3837 863647 ~ 863882 (-) True G135214
TU199753 lncRNA downstream 102485 764744 ~ 765234 (-) True G135202
TU199736 lncRNA downstream 135288 731886 ~ 732431 (-) True G135195
TU199721 lncRNA downstream 158688 700539 ~ 709031 (-) True G135185
TU199578 lncRNA downstream 220523 643884 ~ 647196 (-) False tmem244
TU199780 lncRNA upstream 12337 917428 ~ 918246 (-) True G135218
TU199802 lncRNA upstream 16354 921445 ~ 921878 (-) True G135232
TU199804 lncRNA upstream 19175 924266 ~ 924509 (-) True G135234
TU199795 lncRNA upstream 102055 1007146 ~ 1069889 (-) False G135226
TU199789 lncRNA upstream 120381 1025472 ~ 1026881 (-) True G135222
XM_043218968.1 mRNA downstream 45209 767443 ~ 822510 (-) False epb41l2
XM_043218967.1 mRNA downstream 45263 767443 ~ 822456 (-) False epb41l2
XM_043218957.1 mRNA downstream 45263 767443 ~ 822456 (-) False epb41l2
XM_043218952.1 mRNA downstream 45264 767443 ~ 822455 (-) False epb41l2
XM_043218955.1 mRNA downstream 45265 767443 ~ 822454 (-) False epb41l2
XM_043218581.1 mRNA upstream 116539 1021630 ~ 1025274 (-) False gjb7
XM_043218578.1 mRNA upstream 116539 1021630 ~ 1025274 (-) False gjb7
XM_043218580.1 mRNA upstream 116539 1021630 ~ 1025274 (-) False gjb7
XM_043218579.1 mRNA upstream 116539 1021630 ~ 1025274 (-) True gjb7
XM_043219374.1 mRNA upstream 143759 1048850 ~ 1058048 (-) False LOC122324736
XR_006247189.1 other downstream 45261 753567 ~ 822458 (-) False epb41l2
TU199809 other upstream 33074 938165 ~ 940175 (-) True G135237
TU199808 other upstream 34082 939173 ~ 940175 (-) False G135237
TU199811 other upstream 34082 939173 ~ 965395 (-) False G135237
TU199861 other upstream 197614 1102705 ~ 1103113 (-) True G135276
TU199860 other upstream 198215 1103306 ~ 1105818 (-) True G135275

Expression Profile