RNA id: XM_043219205.1



Basic Information


Item Value
RNA id XM_043219205.1
length 2368
RNA type mRNA
GC content 0.46
exon number 12
gene id slc22a2
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23062273 ~ 23067373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGGGGCTGGTTAGTTAAATTATGGTTTAGTCTTTAGTCTTTGGCACTGTATGTTGACGCAATGCCAAAAAAACTACCTACTACACAATGTACTAAGCATGTaatacttgattaaaaaaattatacagtgACGAATTACACAACAGGCTTCAGATGTCACTgggtttaaaatgtaacatcttGTCCCCCGTGTCCCATCCCAGCATGTAATTGGTCAATCCCAGCACAAATATATCACATTTCAACCTCCTCTGGACTTTTGGTCAGCCAGCTGTGGGTAAATACTGTGCCTCAGTTTAAcatacctctttttttttagctgcagATGCCTTCGGGTCCTCCACCGCCAGCTGTACATTGACCATGACCACTTTTGAAGACGTCTTGGAGGAGGCTGGCAACTTCGGGCTTCACCCCCGAACattggtgccgtgacccggGAGTCAGTAAGATCCGGGAAGCATGCGGCTGGAGTCTTCAAGACGCTCGCAGGGCGACGGTGCCCTTGATGAACAGCTCCTTAGGGGTGACGTACAGTAAGTGTCAGAAGCTGGACGTGGAATGGAACGCCACCGGTTTGACCTGCGACGATCCAAAAAGTGAGCTTATCCAGGCCCAGCTTTCTAGTTTGCCGATGACGGGCTGTACGGACGGCTGGGAGTACGACTACGAAGGGAGGCAGTCCTTCGTCACCGAGTTTGATCTAGTGTGCGCAGACGCCTGGTATGTTGACATGTTCCAGGCCACGCTCAGTATTGGTTTCTTAGTGGGCAGCATTGCAATTGGATACCTGGCAGACAAatacGGCAGAATGAAGAGTTTCCTAATGACCAACTTCTTCATCGGAGTGACGGGGATTCTGGTGGCCACGTCGCCCAATTACATCGCCCTGCTGGTGTTCAGAGTTCTCTTTGGCTTCGGGGTGAAGGGCGGCTGGATGGTCGGATACGTGCTGgTCACAGAGCTGGTTGGAGTCGAACACAGGAGAACGGTGGGAGTGACCTATCAGATGTCCTTCAGCTTAGGCCTTCTCGTTCTTCCTCTCTTAGCCTACTTCATACCAAACTGGCGCTGGCTACAGGTGGTCTTCACCATTCCCTACATCTGCTTCCTGACGTACTATTGGTTCATCCCCGAATCGCCAAGATGGCTGCTCAgccaaaacaagaaaaaagaagcAATGGAGGTCACAGAAGCAATAGCCAAAGAGAACAAAAGGACACTGTCCAAGATTATTGAGACACTGAATGATGAAAACAAAGAGCCCACCCCGAATGCGTCTTTTATGGACCTGTTCAAGACTTCCAAACTGAGAAAATTCACGTTCATCCTGAGCTTCAACTGGTTCACCAGTGCTGTGGTTTACCAGGGTCTCATTATGAGGCTGGGAATCCTCGGAGGAAATGTATACATAGACTTCCTGATATCTGGAATCGTGGAATTGCCCGCAgctttcctcatcctcctcactaTTGAGCGGATTGGCCGCAGGCTTCCTTTTGCAGCTGCGAATATCATAGCAGGAGCAGCCTGCTTAATCACGGCGTTCCTCCCCGACAGTATGTTCTGGTTAAAAAGTGCTGTTGCTTGTGTTGGACGACTGGGCATCACTATGGCTTTTGAAATGGTAGTGTTTGTGAATACTGAACTGTATCCCACCGTTATCAGAAATCTAGGTGTTTCGGTCTGTTCCACACTGTGTGACATTGGTGGGATTATAGCGCCGTTCCTGCTCTACAGGCTTGCTGTCATCTGGCTAGAACTACCTCTCATTATTTTCgGTGCTCTTGCGTTTGTGGCCGGTGGACTGGTTCTGCTGTTACCTGAAACCAAAGGTGTGCCTCTTCCGGAAACCATTGAGGACATCGAATGTCCAAACAGaaacaaagaaaagcagCTGAAGAGTCAACAGCTAGAGAACTTTCTGCCCTCTGACGTGACATTGAACAAAGAAGCTACAGCTGTATGATTGAGACAGAAAACATCCACCTACTTAACTTCATTGCTAAGTGATGCTAATTATCTCTTCTCTTTAAAGGGTTTAATCAAAATGAGCAAACAAAATCAGTTTCTCAATAATCAagcaaaaaagttcaaaagactATAGTTACGAGCAGATATCGTTGACTGtagttaatgtatttttttttgttgttgtttttaaaatacatttttgaccaaaatgtctgtttaaaaaatgttaaataacttAACAGTATGTAcgtatgtttaaaaatgttggcTTAAATTATTCGTGCTAATGGTAAATGTCATTGTACTTGTTTGTTCTGTCGCTTATTAGGGCATGAAAATTGCCACGTCGCTGTAAGAGCAAAACTGGAGCACAAATAAAGAGACTTTCTGTAAA

Function


GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208641 lncRNA downstream 6217 23055048 ~ 23056056 (-) True G141343
TU208617 lncRNA downstream 146321 22909257 ~ 22915952 (-) True G141331
TU208609 lncRNA downstream 168258 22888520 ~ 22894015 (-) True G141324
TU208599 lncRNA downstream 172140 22878732 ~ 22890133 (-) True G141319
TU208678 lncRNA upstream 127807 23195173 ~ 23196196 (-) True G141370
TU208717 lncRNA upstream 503630 23570996 ~ 23571790 (-) True G141404
TU208815 lncRNA upstream 703711 23771077 ~ 23771457 (-) True G141477
TU208816 lncRNA upstream 704151 23771517 ~ 23772116 (-) True G141478
TU208817 lncRNA upstream 707551 23774917 ~ 23781508 (-) True G141479
XM_043219200.1 mRNA downstream 7533 23043100 ~ 23054740 (-) False si:ch211-140l13.3
XM_043219199.1 mRNA downstream 7542 23043100 ~ 23054731 (-) True si:ch211-140l13.3
XM_043219201.1 mRNA downstream 7543 23043100 ~ 23054730 (-) False si:ch211-140l13.3
XM_043220625.1 mRNA downstream 42535 22919130 ~ 23019738 (-) False afdna
XM_043220626.1 mRNA downstream 42535 22919131 ~ 23019738 (-) False afdna
XM_043219198.1 mRNA upstream 792 23068158 ~ 23099346 (-) True igf2r
XM_043218618.1 mRNA upstream 32985 23100351 ~ 23109361 (-) True tdrd15
XM_043219392.1 mRNA upstream 130165 23197531 ~ 23210436 (-) False gopc
XM_043219391.1 mRNA upstream 130165 23197531 ~ 23210435 (-) True gopc
XM_043220393.1 mRNA upstream 253808 23321174 ~ 23380628 (-) False cep85l
unassigned_transcript_2512 other downstream 946484 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 947153 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 949229 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 1215356 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 1220805 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 321803 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 323099 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 323101 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 724711 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 937321 24004687 ~ 24006665 (-) True G141502

Expression Profile