RNA id: XM_043219209.1


Basic Information

Item Value
RNA id XM_043219209.1
length 2949
RNA type mRNA
GC content 0.44
exon number 9
gene id tpd52l1
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20373185 ~ 20407062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGGAAGTGGTGTAATAGTTACTCGCTCTATGTTTAGTTTGTGAGTTTGAAAGcggactgtgtgtgttttcgcGCAAATGGAAAGTTGACCGCTCGGGAATGGAAGATGAGTCTTCCGTGCGTGTGAATGTCACCGCTCAAAATATGCCTGGTTATACCGGACGCGACGGGGAATCTGTCCATGTATCCAGCGGGACGCGGAGCACTGATTTCGGCCGGGATGTCCGCAGCAGCGACGCGAAGGTGCCATCATCATTGTCGTTATCCTCGAAGGATGTTTTGGAATttcataaacacaaacacgaaCCAGGAGGCAATAGCGAGAGGGAAAACATAAGAGCCGTTGACATTTTAAGGAGGAATTTTGGTTCCACTATCAGAGATCCAGAAGATCCCAAAGACCTGGAGAAAGTGGGATTTGACATCAAACTGAACGACTTGGATCATGAAAACGATGGTGAAAGGATGCAATGTAGCACAAAAAGTCTCCAACAAAACATGGAGAGCAACTCAGGATTGGGAGATCCTGATGGGAGTCATCATATTGATTATAATATTGATTTGAAGAGTGGTGAAGACTTCAGCCAGTCAAAAGAGCATGTTTACTGCACTGTATACTGTATTGCCAATGATAATTATAGGATACCTGTTGAGAAAACAACATCTGATCATGAAGCTACAtctttatcatcatcatcagatgTGCTGGTTTTACCTCCCACCGACTTGCCAAATTCAGAATTGGAGCGTGATCACTATCCAGAGCCCTATACAGTCTCCGACCTGATGCTGTCTGGATTAAACGGCTCTTATAACACTGACAACAGTTTATCTGTTGTGTTAACATGTCGTATCTGTCTCGATGACAAACAAACCGTACCGCTACACTGTtgcaaaaatgcagtttgtgAAGAATGTCTGAAAAGATACATCATCTCGCAGgttcaTGTGGGTCGGGCACACTTGGTATGTCCCATCACAGAGTGCAGTGGTTTCTTGGAAGAAGGATTGGTGATTTCGCACCTGTCCAGTGAAGAGTTGGCAAAATACAAGTACTTCTTGGAGCTGAGCAGACTGGACTCCAGCACAAAACCGTGTCCCCAGTGCAGCCTGTTTACCTCCTTGAAGGGTCATAGCCAACAGACAGCCACCAAAAGTGAACATAAGTATAAGATTCAGTGCACAAAGTGCCAGTTTGTCTGGTGTTTTAAATGCCACTCGCCCTGGCACGAAGGCCTGAAGTGTCGAGACTACAGGAAAGGAGACAAGCTGTTGCGTCACTGGGCCAGCGTCATCGAACACGGCCAGAGGAACGCTCAGAAGTGTCCACGCTGCAAGATCCACATTCAGAGAACTGAGGGCTGTGATCACATGACCTGCACGCAGTGCAACACTAATTTCTGTTATCGTTGCGGCGAGAAGTACAGACATCTGCGCTTCTTTGGGGATCACACCTCCAACCTCAGCGTGTTTGGATGCAAGTACCGCTACCTGCCTGAGAAACCCCATCTGCGCCGGCTGGTCCGAGGCTCTGTTTGTAGTTTATTGGACAAAGAGCCTCTAAAGGAAGTGGACGAGGATATGGTGTCAGAGGTGGATCTCAACAACACTGTCACAGAAGAGGAGCGAGAGGAAATGGAGAATGAACTGATTAAGTTAGAAGAGGAAATCACTACTTTGAAACAAGTGCTAGCCTCCAAAGAAAAGCGTCACTTGGAGCTGAAGCAGAAACTGGGGATCACTCCCCTGAGTGAACTGAGACAGAACTTCTCCAAGAGCTGGTACGACATGCAGACCAGCACAGCATACAAAAAGACTTCTGAGACACTGAGCACGGCAGGACAGAGGACCTCGGCGGCCTTCAGTAACCTGGGCAATGTCATCACCAGGAAGTTTGGCGATATGAGgaaCTCGCCTAGTTTCAAGTCTTTTGAGGAGAAAGTCGAAAGCACAGTTTCAAACATTAAGTCAAAGGTTGGAGGAACAGGAGGTGCGGGGAGTTTTGAAGAGGTCCTGTCTTCAGCGGCCCAAGCCAGCGCCCAGGACACCCCTACTAATAATGTGACTGAGAACAGTGAGCGCTAAGGGTTTCAATGGTCCACCAGTGGAACTCTGATGACCCCTAGTGGTTTGGAGACCGCAGTGAAATTTGCACAGGGGGCCCTAACACGGTAATACATGCCTTCAGATGCGTGTTTGTGGATTATCTGTGCACGGGAGGAAAAAACAACCAAGTGGAGCCTGTTTATTCTTTAAGTTCTTTTcgaaatatgtatatttttcgAGGATATTGTCTATGGTGTAGTCCTGCGTTACTTCGTTACTATCATTATTTATACTAACTCAACTTTGTTTAACTGTAACAAAGCATGATACATATCCAGGACCAAAAAGAATCGCTGCGTATACAATCCCAAGAGAAGTACTTGAAAGAATGTTTAACAAAATAGACATTAGTCTTTGTTTTTCCTGTCATGAATGAGTCAACGCTCACATTCCTGTTAACTAGAGTGCGTAAAAAATGAGGATTTACATTTTACTTGCTTGATCTGATACGTCTGATGTAAACCGTAATGTATCGGATGATAATTGTCACTGACCAAAAATGTATAGCTTTGtatcctgtttttttctttcgtaCATACGTGTGAAATTTGTTGCAGCTTTACATGTTTAACACTGACAGTGAAGTCAGGTGttgttttaagattttatagCCGAAATCTTTCTTCAAATTCATACTCAGTGTTGAGCTGCCGTTCATTAATATTGTTAGTcattaaacgtttttttttttgcaaagtcaCAAAGTCCCGGCTCATCAGTCGTGAAATTAAGGTGATCTGAACCATAATAAGAGAccataaaatgaacattaattttACTGTTACTTTGTCAGTAAAAGGGTAAAGCATGGCAgagtatttgcaaaaaaaaaattgctgctC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207243 lncRNA downstream 86190 20286480 ~ 20286995 (-) True G140328
TU207223 lncRNA downstream 104919 20266668 ~ 20268266 (-) False G140315
TU207301 lncRNA upstream 3567 20410629 ~ 20411861 (-) False nkain2
TU207356 lncRNA upstream 219593 20626655 ~ 20626863 (-) True G140413
TU207360 lncRNA upstream 227248 20634310 ~ 20658357 (-) False pkib
TU207404 lncRNA upstream 329526 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 382844 20789906 ~ 20791701 (-) False G140449
XM_043218711.1 mRNA downstream 38272 20330690 ~ 20334913 (-) True hey2
XM_043220350.1 mRNA downstream 44487 20311424 ~ 20328698 (-) True pex7
XM_043218870.1 mRNA downstream 61900 20306639 ~ 20311285 (-) True LOC122324455
XM_043218776.1 mRNA downstream 68311 20301406 ~ 20304874 (-) True pbk
XM_043220219.1 mRNA downstream 77026 20293294 ~ 20296159 (-) True ccdc25
XM_043220489.1 mRNA upstream 3567 20410629 ~ 20542249 (-) True nkain2
XM_043220490.1 mRNA upstream 12340 20419402 ~ 20541424 (-) False nkain2
XM_043220366.1 mRNA upstream 189201 20596263 ~ 20616215 (-) True clvs2
XM_043220374.1 mRNA upstream 219911 20626973 ~ 20632507 (-) True smpdl3a
XM_043220375.1 mRNA upstream 225655 20632717 ~ 20633782 (-) True fabp7b
TU207179 other downstream 310208 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 313582 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 314686 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 757983 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1069217 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 566342 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 791648 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 1102567 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1325484 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1434051 21841113 ~ 21841468 (-) True G140883

Expression Profile