RNA id: XM_043219215.1


Basic Information

Item Value
RNA id XM_043219215.1
length 4736
RNA type mRNA
GC content 0.49
exon number 35
gene id myo6a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1840128 ~ 1876292 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAACGCACACCGACCTCGGAGGCAGCCAGGCGCTTCCCTGGGCGCGCGTGACGTCACAAAGGATCAACATCCGGGACAACGGGACCGAGTTCACGCGGATGCCTACACACTTCGCCGACGGACCGTACAGACGGGCGGAGAGCGACGGAGCGGTGAAATGGATGATGGAAAGCCGGTGTGGGCGCCCCACCCTGCAGATGGGTTCCAGCTGGGCAGAATCATCGACATCAGTGCCGATAGTCTGACCATCGAACCTCTCAACCAGAAAGGGAAGAATTTTCAAGCTCCTGTCAATCAAGTCTTTCCTGCTGAAGATGATGTCAACAAACATGTGGAGGACAACTgcTCATTGATGTACTTGAATGAAGCCACACTACTAAATAATGTCCGTGTGCGCTACAGTAAAGATAAGATTTATACGTTTGTTGCCAACATCCTGATTGCTGTGAATCCATATTTTGAGATTCCCAAGCTGTATTCTCCAGAGACCATTAAACAGTACCAGGGCCGATCGCTGGGCACTCTGCCTCCTCATGTCTATGCAATTGcGGATAAAACTTATCGCGACATGAAGGTGTTGAAGATGAGTCAGTCCATCATTGTGTCGGGAGAGTCAGGAGctggaaaaacagaaaacaccaaGTTTGTTCTCAGGTACTTAACTACATCTTATGGTACAGGTCAAGACATTGATGAACGAATAGTTGAAGcaAACCCGCTGCTCGAAGCGTTCGGAAATGCCAAAACCGTCCGAAACAACAACAGCAGTCGCTTTGGGAAGTTTGTGGAGATTCACTTTAACGGAAAGAACGCAGTAGTAGGTGGTTTTGTGTCCCATTACCTGCTGGAGAAGTCCCGTATCTGCACGCAGGGTCAGGAGGAGAGGAACTATCACATCTTCTACAGGCTGTGCGCTGGAGCTCCTGAAGACATCAAGGAGAAGTTCCACCTCAGCTCTCCAGACTGCTTCAGGTATCTGTGTCGAGGATGCACAAGGTACTTTTCCACCAAGGATTCAGACAAGCTGATACCTCAAAACCGCAAGAGTCCAGAGTATCTGAAGGCAGGTCCTCTGAAAGACCCTCTGCTGGACGATCACGCCGACTTTAACAGAATGTGTGTGGCCATGAAGAAGATCGGTCTGGATGACACGGAGAAGCTCAACATGTTCAGGGTGGTGGCTGGGGTCTTGCACCTCGGAAACATTGATTTCGAGGAGGCTGGAAGCACCTCAGgtggcTGTGTCTTGAAGAAGACATGCGGTCAGTCTTTACAGTTCTGTGCGGAGCTGTTGGGTCTGGACGAGGAAGATCTGAGGGTCAGCCTGACCACCAGAGTCATGCACACCACTGCAGGGGGCGCTAAAGGCACAGCCATCAAGGTTCCTCTGAAGGTGGAGCAGGCCAGCAGCGCTCGTGATGCTCTGGCTAAAGCCATCTACAGCCGTCTGTTCGATCATGTGGTCACCAGGATCAACCAGTGCTTCCCCTTCGACTCGTCTGCTCACTTCATCGGTGTGCTGGACATCGCTGGCTTCGAGTATTTTGAGCACAACAGTTTTGAGCAGTTCTGCATTAACTACTGTAACGAGAAACTCCAGCAGTTCTTCAATGAACGCATTCTCAAAGAGGAGCAAGAGTTGTACCAGAGAGAAGGTCTGGGGGTCAATGAGGTCCATTACGTTGATAATCAGGACTGTATAGACTTGGTGGAGGCGAAGTTAGTGGGCATCTTGGATATCTTGGACGAAGAGAACCGTCTACCTCAACCCAGCGACCAGCACTTCACCGAAACAGTCCACAGCAAACACAAGGACCATTTCCGCCTGACTGTTCCCAGGAAGTCCAAGCTGACGGTGCACAGGAACGTCAGAGACGATGAGGGCTTCATCATAAGACACTTTGCCGGAGCAGTCTGCTATGAAACGACTCAGTTCGTGGAGAAGAATAACGATGCTCTTCACATGTCCCTGGCGAGTCTGGTGAGCGAGTCGAGGGATAAATTCATCGGGGAGCTCTTTGAGAACTCTAACCACTCCAAAGACACCAAGCAGAAGGCCGGCAAACTGAGCTTCATCAGTGTAGGCAACAAATTCAAGaCACAACTGAATATTCTTCTAGAGAAGCTGCACAGTACTGGTTCTAGTTTCGTCCGCTGCGTGAAGCCCAATCTGAAGATGGTCAGCCATCATTTTGAGGGAGCTCAGATTCTGTCTCAACTACAGTGCTCagGGATGGTGTCAGTTCTGGATCTGATGCAGGGTGGCTTCCCCTCTCGAGCGCCGTTCCACGAGCTCTACAACATGTACAAGCAGTATATGCCCGCCAAACTGACACGACTCGACCCTCGACTCTTCTGCAAGGCTTTGTTCAAAGCTCTCGGcctgaatgaaaatgattataaatttGGTTTGACAAAAGTTTTCTTCAGACCTGGAAAGTTTGCAGAGTTCGATCAGATCATGAAGTCAGATCCCGATCATCTGGCTGAACTGGTGAAGCGTGTCAATAAATGGCTCATCTGCAGCCGCTGGAAGAAGGTGCAGTGGTGCGCCCTGTCCGTCATTAAATTAAAAAACAAGATGCAGTACCGAGCCAAAGCGTGCATCCAGATGCAGAAGACAGTTCGTATGTGGCTGTGCAGGAGGAAACACAAACCCCGgATTGATGGGCTGGTGAAGGCGCAGAACCTGAAGAAGAGGATGGAAAAGCTGAACGAGGTGGTGTCCGGACTAAAGGAGGGAAAACAGGAGATGAGCAAACACATGCAGGAGCTCGACTCCTCTATCAACGCCCACATACGGAAGATAAAGAGCACTGTAATGAGCCGCATAGACATCGACCATGAGCACCAGGCTCTGGTCACGCGCTCACAGGAGCTGCTCAGCGCCATGCAGAAGAAGaaacaggaggaggaggagatggaGCGCCTCAGACGCATCCAGGAGGAAATggaaaaagagaggaagagacgTGAAGAAGAGGAGCAGAAGCGCAAACGAGAGGAAGAGGATAGACGCCTaAAAGCCGAGATGGAGTTGAAGAGGAAACAGGATGAGGAAGAGCGCAAgaaaagagaggaggaggagaggagactGCAGGAGGAGATGGACCTGCAGCTGCAGGCGGAGAGGGAGCAGGAGACGGCCCGGCAGGCCGTGCTGGAGCAAGAgcggagagacagagagctgGCCCTGAGGATCGCTCAGAGCGAGGCCGAGCTCATCCCGGAGGAGACGCCCGTGGAAGCCGGGCTGCGCAGtgttgcaCCACCATCACAAAAACTCAAGAGCTTGACCATGGAGGAAATGGCCAAGGAAATGTCCGATCTTCTGGCTCGAGGTCCACAGGTGTCTGCCACAAATGCTCAAGCTGATGTGAAGAAATTTGAACTCAGCAAGTGGAAATATGCTGAATTACGGGACGCCATCAATACATCCTGCGACATCGAGTTGTTAGCTGCGTGCCGCGAGGAGTTTCACCGCCGGCTGAAGGTCTATCACGCGTGGAAGTCAAAGAATAAGAAACGCAACACTCAGGATGAGCAGAGAGCACCAAAAGCCGTCATGGACTATGttgacATAATTGGAAGCCAAGGCTTCATAGCCCAGCAGAACCCAGTTGTGCCCGCCGTGCCTCGGCAGCAAGAGATCGTCCTGAACAGACAGCAGCGCTTCTTTCGCATTCCATTCATCCGACCGGGAGACCAATACAAAGACCCTCAAAACAAGAAGAAAGGATGGTGGTACGCACACTTTGATGGGCCTTGGATTGCCAGACAGATGGAGCTGCACCCAGATAAACATCCCATTGTGCTGGTGGCAGGTAAGGATGATATGGAGATGTGTGAGCTGAGTCTGGAGGAGACCGGTTTGACTCGGAAACGTGGTGCTGAGATTCTGCCTCGTCAGTTTGAAGAGATCTGGGAACGCTGTGGGGGCATTCAGTATCTTAAAAATGCCATCGAGAGCAGGCAGGCACGACCCACGTATGCCACTGCCATGCTGCAGAGCATgctgaaataaacacacacacacacacacacacatatatcacatCACTGCCATGCTGTCAGGCAtgctcaaatacacacacacacacacacacacacataccccaCATCACAGCTCTAGTTCCATAAGGGAATCTGTCAACTCCTACATAACCAGCACTGACTTtcatttagttcttttttttttttttcttttaatattcttttcGGTTTTTAGTCTTTGGacgttgtttttgctttgttctttTTAAGTGCTTCTTTTAAGTAGCCGTCTCATTTATTCTGGATTTATTTGAATATCCGGTGTGTCGAATCATCTCATTGATCTTTAATTGCTGTTCTCGACAGTGTAATTGCCTCTAAACTGCCTCTTAATATAATTTActcaatgtaatatttttgctaTGATATGCGATGAACGTCAGTAATCCGTACTTCACTGGCTCAATGTTCTTTTGAGATAAATTCAACAGTCTCTTCCTAACGTTTGAATCGATCTCGCGTTGAAATAAAGATCCTCTTTGACTTGCAGATGTAAATACTGATATTGTTCAGCACTTTACACTATTCTGAGTTGTTATTCACTGTGAGTTTAACTGCTTGCATAAAGTATTTACAAAAGCTACaatacagtaaatacaataACTCTGGTAAGTAATGACAACTAAATTATGACTTTGAATGAAaaacgtttaataaaaaaaataatgattttaataata

Function

GO:

id name namespace
GO:0048844 artery morphogenesis biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10358 MYO6; myosin VI

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200091 lncRNA downstream 87181 1752733 ~ 1752947 (-) True G135435
TU200090 lncRNA downstream 87672 1752156 ~ 1752456 (-) True G135434
TU200089 lncRNA downstream 90325 1749595 ~ 1749803 (-) True G135433
TU200086 lncRNA downstream 94472 1745359 ~ 1745656 (-) True G135430
TU200085 lncRNA downstream 95274 1744645 ~ 1744854 (-) True G135429
TU200155 lncRNA upstream 1622 1877914 ~ 1878122 (-) True G135480
TU200216 lncRNA upstream 129257 2005549 ~ 2013527 (-) True G135527
TU200237 lncRNA upstream 223704 2099996 ~ 2100241 (-) True G135542
TU200241 lncRNA upstream 482186 2358478 ~ 2358691 (-) True G135546
TU200345 lncRNA upstream 700840 2577132 ~ 2577488 (-) True G135627
XM_043219245.1 mRNA downstream 20735 1808105 ~ 1819393 (-) True mei4
XM_043219246.1 mRNA downstream 21654 1808105 ~ 1818474 (-) False mei4
XM_043219244.1 mRNA downstream 21760 1808105 ~ 1818368 (-) False mei4
XM_043219243.1 mRNA downstream 38165 1790036 ~ 1801963 (-) True nt5e
XM_043219051.1 mRNA downstream 179592 1655096 ~ 1660536 (-) False pnrc1
XM_043220164.1 mRNA upstream 3030 1879322 ~ 1896773 (-) False senp6a
XM_043220163.1 mRNA upstream 3030 1879322 ~ 1896773 (-) True senp6a
XM_043220165.1 mRNA upstream 3030 1879322 ~ 1891554 (-) False senp6a
XM_043218622.1 mRNA upstream 26070 1902362 ~ 1907463 (-) True nrl
XM_043220216.1 mRNA upstream 58245 1934537 ~ 1965297 (-) False kcnk2b
TU200031 other downstream 179612 1655636 ~ 1660516 (-) False pnrc1
XR_006247187.1 other downstream 268429 1546489 ~ 1571699 (-) False pcmt
XR_006247188.1 other downstream 268430 1546487 ~ 1571698 (-) False pcmt
TU199996 other downstream 268577 1558782 ~ 1571551 (-) True pcmt
XR_006247345.1 other downstream 340641 1499378 ~ 1499487 (-) True LOC122325606
TU200217 other upstream 129257 2005549 ~ 2008962 (-) False G135527
XR_006247386.1 other upstream 144089 2020381 ~ 2020592 (-) True LOC122325649
XR_006247402.1 other upstream 145339 2021631 ~ 2021843 (-) True LOC122325666
XR_006247394.1 other upstream 146584 2022876 ~ 2023087 (-) True LOC122325658
XR_006247374.1 other upstream 147825 2024117 ~ 2024326 (-) True LOC122325636

Expression Profile