RNA id: XM_043219248.1


Basic Information

Item Value
RNA id XM_043219248.1
length 2955
RNA type mRNA
GC content 0.47
exon number 20
gene id snx9b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22859476 ~ 22877145 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGATCAGTGAGTTTGTTTCCGGTTGTGTCTCTTATGTGTAACACACTCAGCTGCAGTAAAGTTGAACAGCTCGCGACCGCTGGAAACGACGAGTTTGGGTTTACACACACCTGACCCGCTTCGTTTGAGTCGTTTGGGGGGTTTTAACAGGACAATAAACATCATTTGGTGATGTGAATGAACTATTTCGAGGACGATCGTTTCTGGCAGGAGAAACATGTCTGgatgaagaagagagagagagtttatcGCCATTAAACTGCGGGTTTCTGTAATGACTGGTTAATGTGTGTACAATGGAGACGAAGGCACAGGTTTTATATGATTTCGCGGCAGAGCCTGGAAATAACGAGCTGTCTGTTCGAGAGGGTGAGACAATCACAATAACCAATCAGAACATTGGTGGCGGATGGATCGAGGCAAAGAACTCCAGGGGAGAAGTGGGGTTGGTACCAGAGGACTATATAGAGGTTAAACAGGCTCAGCCTTTTCCGTCTGGAGGAAACGCAGCGCCCCTCGATCTCTCGTTCTTCGACAGTCACGTACCGGCCCCGGCCAGCGCCGCACAGGTGGATGTAGCTCAGCCGGAAACCCCAGTCTCCCCAGTTACCCCAGGATTTTCTTCCACCTCCCCCGATGAGACAAGTAATGGTAATGACCCATGGGCGGTGTTTGACAGTAATGCGTCCGGGGGCTTTTCTAATAACTGGGCAGCTCAGCCCGAGGGCACGGAGACCGGGAAAACCAGCAGCAATGCATGGCATTCTGGAGGACAAGGACATCCGCAGGCCTATCAGGGTCCAGACATTTACCCCTACCCATGTCTTATTGATCTCTCAGGTGCAGAAGACGATGAGTGGGACGAGGAGTGGGATGACGTGAAGTCTTCGGGAGGCTATGCTGAATCTGAGGCTGGAGAGGGCGGGGCTATTAACAGAGGCGGAGCTCATGGTTCTTCCATGAAAATTGCCCTCAACAAATTCCCTGGCTTCTCTAAATCAGGTCCTGAGCTGTACCTACTGTCAAAACAGCCTGCCAAAGGAACCAAGTTGCTTGTTTACAGTGGAGAGGTTGGCCCAGTGTGGGCGTATCCAGACTATCAGCTGGACTGTGTTGTCGCTGACCCTAAGAAGGGCTCAAAAATGTATGGCCTCAAGAGTTACATTGAGTACCAAGTCACACCCACTaccACAAACAAGCCTGTCAATCACAGATACAAGCACTTTGATTGGTTGTATGAAAGACTTTTGGATAAATATGGTTCAGCGATCCCAATCCCCTGCCTCCCAGATAAACAGGTGACAGGGAGATTTGAAGaggaatttataaaaatgcgCATGGAGAGGCTTCAGGGTTGGATGTCGCGGATGTGCCGGCATCCGGTCGTCTCCAGCAGTGAAGTCTTTCAGCTGTTTCTCTCCTACAAAGACGAGAAGGACTGGAAAACGGGAAAGAGAAAAGCTGAAAAAGACGAGACAGTCGGAGTCATGATTTTCTCCACAATAGAGCCCGAGGCACTGCCAGACCTGGACCTGATTGAAGTAGAGCAGAAGTGTGAGCAGTTCAACCGTTTCACCAGGGCGATGGATGACGGCGTGAAAGACTTGCTGACAATAGGAAATGAACACTGGAAACGCTGCACAGGCCccCTTCCAAAGGAATATCAACGGATTGGCAAAGCTTTCCAAAACCTGTCCTCGGTGTTCACCAGCAGTGGATACGAAGGAGAGGCTACTCTCACAGACGCGATGACGGCCGCAGGAAAGACCTATGAGGACATCGCTCAGATGGTGGCGgagcagCCCAAGAAAGACCTTCACTTCCTAATGGAAACTAACAACGAGTACAAAGGTCTGCTGGGATGCTTTCCCGACACTATCGGAGTTCACAAGGCTGCCATAGATAAGGTAAAGGAAGGGGATAAACTAGTGGCCGCCGGTAAAATCACCACTTCAGAGAAGACGGCCATGTCTAAACGCGCCAGCACCATGTCATACGCTCTGCAAGCGGAGATGAACCACTTCCATAGCAACCGTATCTATGACTACAACAGAGTGATGCAGCAGTACCTGGAGCAGCAAGTCAAATTCTATGAGATGATTGCAGAGAAACTACGACACGCTCACAGTCAGTTCACTACCATGTAACGGAGGAGCGGCCGTCCAAGAGCTCTCActcgctctttctcttcctcttacGTGATTATTCTCGTTCGGTGTTTTCTATTCGTGTTATCCGTGTCATGATGTCAGTGCCATAAAAATATCCTGTTGATCTCAGGCCAAAGAAAGCGTCGATCGGTGGCCGCGctcaagtgtttttaaaaagcagctaCAGATtgtgactaaaaaaaaatatccgaTTATATGGGgctttaattattataattatgtagtTGTTGATTTAGATGTTCTGTTGTGACCCGAGGTTTGAGTTACGACGAATGTGAACGATGCAGAGAGAGATGTAACTTTACCTACTTTTATACGAGTGATCTAAACCTATTCTGAGGCACATATGAGGCCAGGTTTGATTGTGCCTTGTTTTGTAGAGAccctgcaaaaaaacaaaaaaaacatgctttttatcCACTGCACTTTACTGTGGCCTTTCAGATGCATCATCCTGTTTGTGATTGATCACGGCCAATAACAAGCCTGATCACTTTCTACGGAGGGCTGGTCCTTTTTCCCCATAAGAGACATTCGgatgttgtttttctctctccctgaAGCCAAATTACAAACAGAGATCGTGCTCGGCTTGATGCTTCTTCCACCTCAGTGCTATTATCGCCAGTTTCTCATCCcgtaaaaatgaaattatactcCATCTGATGCATGTTcgtatgttttttgttttttttttatgtatagcaGTGTTCGCAGGTCTTTTGCACACAGGTTGACAAAACTGTTGAGattatgatttaataaatactgaTTTGTACGCTA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208585 lncRNA downstream 28055 22830914 ~ 22831421 (-) True G141307
TU208522 lncRNA downstream 118549 22739641 ~ 22740927 (-) True G141283
TU208473 lncRNA downstream 197235 22660615 ~ 22662241 (-) True G141255
TU208238 lncRNA downstream 317782 22541463 ~ 22541694 (-) True G141083
TU208237 lncRNA downstream 318326 22540688 ~ 22541150 (-) True G141082
TU208599 lncRNA upstream 1587 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA upstream 6917 22884062 ~ 22890133 (-) False G141319
TU208609 lncRNA upstream 11375 22888520 ~ 22894015 (-) True G141324
TU208617 lncRNA upstream 32112 22909257 ~ 22915952 (-) True G141331
TU208641 lncRNA upstream 177903 23055048 ~ 23056056 (-) True G141343
XM_043219255.1 mRNA downstream 13923 22840896 ~ 22845553 (-) True pomcb
XM_043219706.1 mRNA downstream 56509 22793237 ~ 22802967 (-) True si:dkey-206f10.1
XM_043220475.1 mRNA downstream 67534 22777121 ~ 22791942 (-) True parp1
XM_043218592.1 mRNA downstream 83044 22769919 ~ 22776432 (-) True lin9
XM_043219919.1 mRNA downstream 175830 22670042 ~ 22683646 (-) True clic5b
XM_043220611.1 mRNA upstream 40519 22917664 ~ 23019735 (-) False afdna
XM_043220622.1 mRNA upstream 40519 22917664 ~ 23019735 (-) False afdna
XM_043220621.1 mRNA upstream 40519 22917664 ~ 23019735 (-) False afdna
XM_043220619.1 mRNA upstream 40519 22917664 ~ 23019735 (-) False afdna
XM_043220610.1 mRNA upstream 40519 22917664 ~ 23019735 (-) False afdna
unassigned_transcript_2512 other downstream 743687 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 744356 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 746432 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 1012559 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 1018008 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 512024 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 513320 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 513322 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 914932 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1127542 24004687 ~ 24006665 (-) True G141502

Expression Profile