RNA id: XM_043219278.1


Basic Information

Item Value
RNA id XM_043219278.1
length 3315
RNA type mRNA
GC content 0.44
exon number 10
gene id ccm2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10638226 ~ 10648648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAAGCACTGTGGGTAGACGTCCTACGCCCAAAATGGCGGCAGGATTGAAAagtttgttgctgtttttgttttattttatggcattttatCGTCCTGTGTCCCCTTCTGAATAAATCCCTATATTTATCACAGTTAAGAAGGTTGGTCGTTTGTTTCCGATCCACGAAGGCGTGATTTGGATCggtgttttgtttagtttagctCGGTAAAGCGCCTCCTCCGTGGACGCGTACGAGGCAGATGGCTCTGAACTCGTGGATATCACTGCGTCTCATACGATTAAAATGAAGAGCATTTGTACATAGAGATGGAGGATGACGTAAAGAAAGTCAAAAAGccaGGTATTGTGTCTCCGTTCAAGCGGGTGTTTCTGAAAGGAGAGAAGGGGAGAGATAAGAAGGCTCTGGAGAAGTCCACCGAGCGCAGGGCCCTCCACaccttctccctctctctcccggACCACCGTATCGACCCAGAGATTCTGCTCAATGACTACATTGAGAAGGAAGTTAAGTACCTGGGACAGCTGACCTCAGTTCCTGGATATCTGAATCCCTCCAGCCGCACAGAAGTTCTGCAGCTTATTGACAATGCCAGGAAGTCTCATCAGTTGGCAGGGCAGCTGACATCAGAGCAGGATGCTGTTGTCAGTTTGTCGGCATACAATGTGAAGCTTGTGTGGCGCGACGGAGAAGACATCATTCTTCGCGTACCCATACATGACATCGCAGCTGTGTCCTACATCAGAGACGACTCGCTCCACCTCGTGGTGCTAAAAACGGCTCAGGAGCCCGGTGGTTCTCCATGTCATAGTACAGAGATGTCAAAGTCTCCCACTCTGAGCTCTCTTTCGGAGAGCGGGGCTGTGCTTGTGGAGGTCTGCTGTCTGCTTGTGCTGGCAGTCGACAATAAGGCTGCGGCAGAGGAGCTGTGTCTTCTGCTTAGTCAAGTCTTCCAGATTGTCTACACAGAGTCCACCATTGACTTCCTGGACAGGGCCATCTTTGATGGAGCCACAACCCCCATCAGGCATCTCTCGATCTGCAGCGagGACTCCTCGAGCAAAGATGTCAAAGAAGTGTTTGAGGCCGAGGCGAGCACATTTACTTTTTCTAGTTCTCTAGAGGCGGGACACTCCTCTAGCCCCTCCCCCTCCTCCACCCCGGCCTCGCCGCAAACCATAACAGCCAGTGAGAGTGAACTAAGCACAACGGCTGCTGAACTGCTACAAGACTACATGACTACATTGAGGACAAAGCTGTCATCTCAGGAGATACAGCAGTTTGCCACACTGTTACGCGAGTACAGAAACGGAGCCTCCATCCATGAGTTCTGCATCAACCTGCGGCAGCTTTATGGAGACAGCAGGAAGTTCCTCCTCTTGGGACTGCGGCCTTTCATTCCTGAGAAGGACAGCCAGCACTTTGAGAACTTTTTGGAAACCATCGGCGTGAAGGACGGCCGCGGCATCATAACGGACAGCTTTGGGCGTTACAAACGTACGACAAGCTCTGCGTCAGACTCCACCACTAACGGAAACGGTGCTGCGGGCGGCTCGGACGAAGGAACGGCCACCTCTGAGGGCGACGAATGGGACCGCATGATTTCAGACATAAGCAATGACATTGAAGCGTTAGGAAGCAGTATGGACCAGGACGGCGTGTCGTCTTGATGTCACGGCACTGGGTCAGTGACTCGCTGCGTGCTTTAGCCAATCACCACTTGAGATAATCACATGGGCCATCGGTTCATATTGCTGTCCATCAAATCTGACAATGCTGGAGTTCGGATACTGTATGGATACCACTTCCTGGCCATCCTCCTTATTTTTATACGTTGTGCCATATTAACACGAGCagattttttcagattttgagAATTGTGATTTTTCAAGATCTGCGATAGAAGGATCATGTATTGCTGTGGACAGCAGTTGTGTTCTTCTGGGATGTTTATTGGCAGTATCTGCTACCACTAATGAGAGACCTTGTTGCTGGTAGATCTTGCTCTTCGCGCTGATCCGAAAGCTTATTTCCACCACAGAATACAAAGAGCTTGttaccatttattttacacttttactttttttcccccctcacaGTTCTGACAGaatctcagaattgtgagatataaaatgTCAGAACttacaattatacatttataactaAATTGAGAGAAATGTGAGAATTGTGAGGTAAAACATGttaattttcttaataaaaaaaaaaaggtaaatgtctttttatccCATAGTTTAGACTTTTTTACTGCAAATTCAAGTTAAACCTTTTTACTAATTCTATCCAAATCACGAGAGAAAAGCAACAGTTACCCCTTTTtatcagtattaaaaaaaaaaacaacaaattttctctctcttgtgtTTTAAGTTTGTCTCGCAACTGAGTTCGTCTTAAAATTAAGGGTTGAGAAccgtttagaaaaaaaacttgcGCAAAACCTTTTAAATGGAAGTTTATTTATCTCGACTGAGAGGAAAAagtcacattattattttttttttaatatataaaaaaaaaggtaattgacACTCTCACTTTGGGTCACTTTTTCTCAGAAtctcacatttttatttcagtcagtcTTGCAATTGAGTTTTTTAATGTTCAGCTGAGAGAACAAAGTGtgtcaaattaatttgaaggtaactttttttttttattctgtcgCAGAAATAAGCTTCCGCGGATGTGAGATCAGTTTGCCTGCGTCTCATTCATTTGTAATGCGACCTCTGATCAGTGTGAAGGAGCAGTTTGGAGCGTTGCCTGGTGGCCTTCCTCAAGCGTGATCTGTATTGCCTTACGTGTGTGTTGTAACCTGATGGAAGTGAGGTGCAGTATATTTCCTCCTGCAATGAAGTGCTAATCAAAACTTGACCCTTTTACACACCCTTATATTAACTGGCCGTTGTTCTATTACACTTCTTTTTCCTCTATCGTATATTTTTCACTTCTTCTATATTTGTTTCAGCCAGGATTGATTATAATTACCCAGTTATTATCAAGTGGGTTTCTTCAGGTAGGAAATGTAGCACtatgtattttttggttttgactGAAAACCTGGAAAATTTGGATATTAGACAAAGTCAGTTTTCTGGCTGATCGCGAATGCAATATTCACTAGACATGTCCCGCCATTCATTGTATCTCCTCCGAGATTTCAGTTATCTAACATTGTGCCTTGCAGAATCACTGATTGTATCATCCAACATGGATGCAAGTAATATTCTGTAATCTGTACAGAACGTGACTGAAGTATGAGTTTATTAAAAAGTGCAGCACTTACA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0001570 vasculogenesis biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203042 lncRNA downstream 3455 10633850 ~ 10634771 (-) True G137466
TU203035 lncRNA downstream 6962 10630721 ~ 10631264 (-) True G137465
TU203030 lncRNA downstream 17285 10618935 ~ 10620941 (-) True G137462
TU203028 lncRNA downstream 26771 10609843 ~ 10611455 (-) True G137461
TU203000 lncRNA downstream 75765 10556745 ~ 10562461 (-) True G137448
TU203047 lncRNA upstream 70147 10718794 ~ 10720911 (-) True G137468
TU203171 lncRNA upstream 104200 10752847 ~ 10753258 (-) True G137559
TU203172 lncRNA upstream 105310 10753957 ~ 10754191 (-) True G137560
TU203189 lncRNA upstream 130483 10779130 ~ 10779406 (-) True G137573
TU203194 lncRNA upstream 137306 10785953 ~ 10786335 (-) True G137578
XM_043219039.1 mRNA downstream 11182 10621180 ~ 10627044 (-) True enpp5
XM_043219415.1 mRNA downstream 87653 10494086 ~ 10550573 (-) False cdc42bpb
XM_043219277.1 mRNA upstream 399 10649046 ~ 10699432 (-) True xkr6b
XM_043219946.1 mRNA upstream 190499 10839146 ~ 10870735 (-) False si:dkey-71h2.2
XM_043219948.1 mRNA upstream 190499 10839146 ~ 10870733 (-) True si:dkey-71h2.2
XM_043219945.1 mRNA upstream 190499 10839146 ~ 10870732 (-) False si:dkey-71h2.2
XM_043219947.1 mRNA upstream 194212 10842859 ~ 10870735 (-) False si:dkey-71h2.2
TU203003 other downstream 67489 10567297 ~ 10570737 (-) True G137451
TU202840 other downstream 699349 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1303165 9330137 ~ 9335061 (-) False pcsk9
XR_006247225.1 other downstream 1359261 9265372 ~ 9278965 (-) False bloc1s2
TU203048 other upstream 73274 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 283915 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 483979 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 526547 11175194 ~ 11182169 (-) False LOC122325476
XR_006247255.1 other upstream 718276 11366923 ~ 11368490 (-) False gsx2

Expression Profile