RNA id: XM_043219282.1


Basic Information

Item Value
RNA id XM_043219282.1
length 5033
RNA type mRNA
GC content 0.46
exon number 12
gene id man1a1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23628261 ~ 23724208 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCAACGAGACTTTACACAGATGTGTTTCAGGCGTGATCAGTTGAGGCGGCAGGACTCCGTTCGCGCAGCGGGATCAACTTCTTTCGGAGGATCTACCGTCTCCTCTTCGGACGCGCCGAGTTCAATGTAACAGGTATCGTGAGCGGCGCGGGTCAAGGTGATCGGGGAGTTACTTTGTGGCAGAATTGAACACGTTTAGACGGGGTTTTTAAACGCAGAAGAAAATGCCTGTAGCTTCTCTCCTGCCTTTCACGGCCACTCCGAATAGGAAGTCCGCCAGCCCGACCTCCTTCAGGCTCACGGAGAAATTCATCTTGCTTTTGGTGTTCAGCGCCTTCATCACCCTGTGTTTCGGGGCTATCTTCTTCTTGCCGGATTCCTCAAAGCTGCTCAGCGGAGTTTTCTTCCGCTCGTCGTCGGTGGAGGCAGAGACGCGCGCAGGTACGGTCAGCGACACCAGCACCGGCGCGGGCAAGGATGAGAAGATCCTGGCCAAGATCAAGAAAGACCACGAAAAGGCGCTGATCGAGGCCAAGGACACCCTACAGAAGCGGCCGGACGAGATCAAGCGGGACATCAACAGCGACAAGGCGAAACTTGCGCAGAGCGGACCGGAGAACGGGGCGAAAGCTGACAGCTTGCCGTTCGTGCAGTACGCGCGGCCGCCCGGATCAACAGGGCGCGAGCCCGCCGATCCCGACGTTAAAGCGAAAAGAGCCAAGATTAAAGAGATGATGCAGTTTTCTTGGGACAATTACAAGCGCTACGCCTGGGGCTCCAACGAACTGCGTCCCGTCTCTAAGCAGGGCCACTCCAGCAATTTGTTTGGAAGTCTCAAAGGAGCCACCATTGTGGATGCGCTGGACACGCTCTACATTATGGAGATGTATGACGAGTTTGAGGCTGCTACCGAGTGGGTGGAAAGGAACCTAGACTTTAACATGAATGCCGAAATCTCCGTCTTTGAAGTGAACATCCGTTTTGTTGGAGGCCTGCTGTCCGCCTATTATCTCTCAGGCAAAGAGGTGTTCAGGAGAAAAGCTGTTGAACTAGGAGAGAAGCTGCTGCCTGCTTTCAAGACCCCGACCGGCATCCCCTGGGCTCTTCTCAACCTAAAGAGTGGGATTGGCAGAAACTGGCCATGGGCGTCAGGCGGAAGCAGTATTCTCGCCGAATACGGGACGCTGCATTTGGAGTTCATGCATCTGAGCGAGCTTTCCAGGAGACCAGTTTTCGCAGAGAAGGTAATGAACATCAGAAAAGTGCTGAATCGACTGGACAAACCTCAAGGGTTGTACCCGAATTACCTGAACCCTAACAGTGGACAGTGGGGCCAGCATCACGTCTCGGTTGGAGGCTTGGGGGACAGCTTCTACGAGTACCTGCTGAAGGCCTGGCTCATGTCAGACAAAACTGACGAAGAGGGAAAGAAGCTTTACTACGACGCCCTGCAGGCGATTGAGAAGAATTTGATCCGTAAATCAAGCGGAGGGTTGACGTATATCGCTGAATGGAAGGGCGGACTCCTGGAGCATAAGATGGGTCACCTGACCTGCTTCGCCGGTGGTATGATCGCTTTAGGGGCGGACGGAGGCCCCGATGATAAGACGGGTCACCAGATGGAGCTGGCGGCTGAGATCGCCCGCACATGTCACGAGTCTTACGCCCGAACAAgtatgAAGCTGGGTCCCGAGGCCTTCCGTTTCGACGGCGGCGTAGAAGCCATCGCCACGCGACAAAACGAGAAGTACTTCATCCTGAGGCCGGAGGTCATCGAGACCTACATGTACATGTGGAGGTTCACCCACGACCCCAAATACAGACAGTGGGGCTGGGAGGCGGTGCAGGCTCTGGAGAAGTACTGCAGGGTGGAAGGAGGTTACAGCGGAGTGAGAGACGTCTATGCTAACACTCCCAACCATGATGACGTGCAACAGAGCTTCTACCTGGCTGAAACGCTCAAgtATCTGTATCTTTTGTTTTCCGACGATGACCATTTGCCCTTCGAACACTGGGTGTTCAACACGGAGGCCCATCCTCTTCCCGTCATTAAGAAACAGAACCTAGAAATAGAGAACCATCTCAAGTAATCTTCATCCAACCCCAAAGCGCCGCAGAGACGCAACTTCCTGGACCTGCTTTAACGGTGGACAAGAGCTATGGACGCGAAACCCCTGTGGCTGTAGAGTTCCTGTCCTCCAGGACTTTATCTGGAGCTTGGTGTTTCTCCACAGCCACCTCTCCTCTTCCGTCTCTCTTCTCGGGATCCCGCATGCTGCcccgtccccctctctctctgtcctcgaAGCTATGGACACGTCTCTGAGCCTCAGAGACGCAGAAGGACCATATTTCCTCTGTGAGGAGACCGGACCAGACCATTTTCCATCGTACTTGTCCTCTCACCCATGTTATGAAGCCATAGGTAATTCGAATTGCATCGACGTCCTTCTGTTTTTTGCATCGTGTGCGTTTACAGGAGCGAAGATGAGAGAGATCCACTGAACTTCGCTGTATCTTGCtgtctatttttattgtaatttttgggatGAGGTTTGGTTCGGTTTTTTGAGGCTTTATTCGACAGCAAGGTAGTGAAACCAAGTCAACTAGTGCCTTTTAGTCTTATCGATCATATTAATCAACTTTTAATAGCAACACTATATTTATTTTCGCTGTGAAGGTATCTTCCTACCGGCCTACAGCCCTCTTACCCTCATTATGGATGTAAGAATCAGTCGTTTATCGTTCATTCCTCTACATTTGTGAGCttatttgttcataaaatgtgtacaaaatgtgttttgattgtTTACTTAATCAACGGAAGCAGAGACTTTTTATCTTAGACGTGTAAAATAGAGTACTTTGTGTTAATTTATTACTCAAGATATggggtttgtttctttttttcagtgagGAGGGGACTATGGAAACTGTGGGGCCCCTAAAGGAGATGataggaaaaaatatatgaCCAGAgggaaaaattacatttcaatgttttttttcgaTTCGTTGCAAAACTATTGCGTTTTCCCAAGAAGCTTTGGGTTCACTCATGAACACTGAAATACTGTAGTCTtttctttatctctttttttttgttgttgttattttaaattgcgcAGAAATTCAGAAACCCCAAAATTTTCTTCGGCAAACGTTTTGCGAGCAAGGAAAAAAATTCTTTTGTGGAACGCAAGCAAGTTTCCTTGTCggcaagaaacatttcttgggAATGCAAAAAAGGAAATCGTGAAAGGAAAAGATTTTATGAGCAAAATTTAGTGATTTTTGTGAGCGACGTCAAAAGATTCTCTGCGGAATGCAGAAGGTTCGCGAGAGAACACAAAagtttgtgggaaaaaaaaacgtttttgtgaATGAATGTAGAGTTATTCTGCGCTACGCAAAACTTCTTTATTTTCGAGCAATTGCAAAAGTTTTGCTAACAGGCGCAAAAGTTATTTTCACAGACGAACAcgtaatttttacaaaaatttctGTGGAAATACAAAGTTCTGTGAATTGCCAGTGTTTCCAACTGCTGAGTTtcttaaaagtaacacattttttacatttttctgatcgaacccaaaggttttttttgaggGAATGCAAAGGTTTTGTACACATAAGCAttgaaatcaattttttttctcccgtcTAATCACCATGTCCCTTTAGGAGCCCTGCAGTAAACTGCGTCGAAGCTGCTTGAGTCCATaggaaaagtgttttattaggACAACGCGGGCAGCATCGGTCGAAAAGGGGAGtgaatatatttgtatgaatGTACCACCAAATGTGAATTGAACATACTTTGGCCTAGTTGTTGTGATTTATCATttacctgtttgtttgttcgtttgttcCTTTGATTTATCATGAAAGCACAAAGTTCAGAATCAGTATATTTGGGTTCTCCGTGAAGAAAAGGATGGGAATTTTACTGTAGGGCCACGTGACGGCACAAGTGAGGAATTTCGattaaaaaatagcaaaacgATGAATGCAAAGCAGTCCATGGCACtggaaacaacacacacacacacacacacacatgaatcaCATACACTACATCTATTACACATTACATAGCCACACTGGCTTTGAGAAATGGACCGATTCCCATCTTATTAGTATGTGTTGGGAATTTGAGGAGTGCAAGCGTCTACATTTAGACAGTGTTCCCAAAACTACGCCAAACGACACCACCCTGCTTAACTGGCACGTCGTGGCGGTTTTAACCTACGTATTATACTAGTGGATTTATGTGGAAACAAATACCTCGCAGAGATTCCTCTCTTGAGGCCAGCGACTGCAACGCTTGACGTGCTAACGAACAGCGTACTGTCAGAGTTAGGAGCCGCGATGTACACGAAAGTACCGCCATCTTAAGGGAGGCCCGTCATGAAACACTGTGACACTGTAGATAAGACATCGCGCTCACTGTATTCACGATACTGCGAATCTAATCGATGTTTAGCACTGCCGCGGCTAGCGACTGGTCCTGTCTCTTTAGCGAAAGCGATTCCTCGAGCAGCGGTCCTCGGCTGGCTTTCGGGGGGAAAAGACGTTTCCTCGCGTCCGGTGGCGGTGCGCAGAACAGGAGAACGTGCTTTTCAGATTAAGGATTTGTCGTTTAAATATTGTGTTGATGATCTTGCATAGaaaatgccttttttgtttgtgattctcgttgtttatttcttcatgaGACAACCTCAAAAATGTAACTGTACAATATTGCTGATAATCATTCCATTGCACATAGtctgatttgtttttggtttttttctttaatatatatgcaattaattttgtGGGAaagtgtttggttttgtttttttttcttttaatttttttttttaattgtatgtatCTCATTCTGGCAAACTGCCAGCCGTCATTTATATAAATCTTACGATcttatgtaataaattatattaaagagCAGCAAAGGTTTTTGATAAACTATATTTGTTACACttaaattgtgaataaaacaatcttttaatataa

Function

GO: NA

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208717 lncRNA downstream 56471 23570996 ~ 23571790 (-) True G141404
TU208678 lncRNA downstream 432065 23195173 ~ 23196196 (-) True G141370
TU208641 lncRNA downstream 572205 23055048 ~ 23056056 (-) True G141343
TU208617 lncRNA downstream 712309 22909257 ~ 22915952 (-) True G141331
TU208609 lncRNA downstream 734246 22888520 ~ 22894015 (-) True G141324
TU208815 lncRNA upstream 46869 23771077 ~ 23771457 (-) True G141477
TU208816 lncRNA upstream 47309 23771517 ~ 23772116 (-) True G141478
TU208817 lncRNA upstream 50709 23774917 ~ 23781508 (-) True G141479
TU208819 lncRNA upstream 59121 23783329 ~ 23783811 (-) True G141481
XR_006247153.1 lncRNA upstream 141638 23865846 ~ 23868883 (-) True LOC122324337
XM_043219868.1 mRNA downstream 119717 23403070 ~ 23508544 (-) True fam184ab
XM_043219869.1 mRNA downstream 119719 23403070 ~ 23508542 (-) False fam184ab
XM_043218694.1 mRNA downstream 226870 23384571 ~ 23401391 (-) True mcm9
XM_043218695.1 mRNA downstream 226870 23387970 ~ 23401391 (-) False mcm9
XM_043220393.1 mRNA downstream 247633 23321174 ~ 23380628 (-) False cep85l
XM_043219343.1 mRNA upstream 61544 23785752 ~ 23823041 (-) True tbc1d32
XM_043219351.1 mRNA upstream 112277 23836485 ~ 23840023 (-) True gja12.2
XM_043219233.1 mRNA upstream 221967 23946175 ~ 23952434 (-) True serinc1
XM_043218826.1 mRNA upstream 289942 24014150 ~ 24058837 (-) True tmem121ab
XM_043218633.1 mRNA upstream 530185 24254393 ~ 24261169 (-) False LOC122324315
XR_006247154.1 other downstream 226870 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other downstream 226870 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other downstream 226870 23390467 ~ 23401391 (-) False mcm9
unassigned_transcript_2512 other downstream 1512472 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 1513141 22115038 ~ 22115120 (-) True trnal-uaa_36
XR_006247216.1 other upstream 67869 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 280479 24004687 ~ 24006665 (-) True G141502
TU209065 other upstream 533578 24257786 ~ 24261036 (-) False LOC122324315
TU209099 other upstream 801674 24525882 ~ 24530875 (-) False slc35b2
TU209125 other upstream 847205 24571413 ~ 24647421 (-) True G141651

Expression Profile