RNA id: XM_043219285.1


Basic Information

Item Value
RNA id XM_043219285.1
length 2868
RNA type mRNA
GC content 0.49
exon number 18
gene id armc2
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16896561 ~ 16911932 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGTGGCCGTGGTTGACCCTGTGGAGTGCGTCCCTCTGTCTGCTTTCACACAAGCTCGTCTTTCTGGATTAAAGATGATCTCTTTAAAACATTGAAATCAAGGCCTAACGCGTTTGGAATTTAAGACCTTTTTGGTTATAAGGTAATGGACAAGGTTCCAGGCCGTTGATACCGGTACACATCCCTATGGATCAAACATGTCTTTAATGGAGCTTCAGGACAAAAGTGAGCGTGTCTACACGAGCACTGGCCTCAGGAGACAGACGAGTGCTGAGATTGTGTCAGAAGCTCGTCGCTCTCTCAGAACTCTTGCCACACAACGGCCTTTCACACCTCAGGAAAAACATCGGCAGCTCTTCGGAGAATCCTCTTCTCGTGCACATGATGGACGACCACCATCTGCATTCAGCCTACATGCCCGACATTTTGAAGCTCCTGACTCCAGGCCAGGCTCTGGAACTCGTCTCAGCCCACTGGAACGTCCCAGGCTGTCTGTGTCCctggatgaggatgaggatgacgATGTTGATGAagcaactctccccaaaccccCATCTGAGCGAGGGTATACAAGGATAGGATCAGGAGGTTCTCGAGCCAGACAGCTTAGAGCAGCTTCCATAAACAGGCTACCACCAATGACACCAAACACAAagaATATGGCTCTAGAGGCAAGGATAGGAGCAGACCAACCGGGTGACAGAGAAAAGCTACGTTATTCTGATATTACAGAGCATACAACAAATTCATCCTCTGAAACAGACCTTCATATAGTTACTAAACAGAGGATAGCGCAAACTGATGTATCCAGCGCAAGAGGATCAAAACCAGAAGTCAAGCTTGGGCATGGAGACACTGGAGATGACAACATGGATGAATCTGTGTTCTGGAACTCTATAGTTCTTCCTGTCCTTCAAGAATTTGAGTCCTTTGCACCAGGTGATGCCGTGTCAGACGAGACTGTGGGAGAACTGTGTATCGCATGCAATGGTCTCCATGATGCACTGGCAGAGAGAGGCATGCTGGGAAGGCAGTTCAAAAAGAGGTCCACCATCCTTAGAACACTTTTCAGGCTTATAGATGTAGGATCGGATCGACTTAACCTAACATTAGCCAAATTTATACTTGCACTCAGTGTGAGTGGAAACAACTTGCTGAACATCTGCAAACTCGTCTTCAAAATCAGCCGGGACGCTAGTAACGATGCCCTGTTCCTCAATGGCTGCATCCTAGACTCCCTTCTGTCTCTGCTCCACTGTGAGGATGTGTGGAGTAAAGGTGAAGCCCTGTTGTACTGTGTTGGCTCACTGAAGCTCCTCTCTGGGAACAGCGCCATCTCCAGGCTGTTGCTGACAAAAGGCTTCGTTGGTGTACTGCTGCAGCTGTCAAAGAGACTGATGCATGGTCCATCTTCAACTTCTCATGGGTCAGAAGTAGGAGTAGGTCAGCCTATCATTGCTGGACACATACTGGTACAGGTCACAGCAGCTTTGAGAAATATAGCTGACCAGTCAGAGTCTCGGCCTTCCTTCCTGTCCAACAAGGCATTCTCTACTCTTTGTTTGATTCTGGAGAACCACCGCAATGACCTCGACGTCTGCATTTATGTGGCCCGAATATTTAGCAAGCTGTCCACCTACACTGAATGCTGTCATGCACTAGCTGAGACGCCACGTTGCTGCAGCCTATTTTTGGATCTGCTAGGCAAACACAGCAGGAAACAGGACCTAGTTGTGCGTCTTCTGTTCACACTAGGAAATCTGACAGCCAAGAGCACTGAAGCCAGAGAGAGAGTCTATGAGGAGGAAGGTGGGATAGATGTCCTCTTAGATCTTTTTCAGGTCTACCAGGAAACGCCATCGTCCCCTGAGCAATGCCGTGTCCCTGAGAGAGAGGACGTCCTGGTCAAACTGATCAGACTGCTGGCCAACCTGGCCATCCATCCCACCGTGGGCACGGCACTGGCTGCCAACACACTGTGTGTACAGCTGCTGCTGGAAGTGctggAGTGCATGTGCGTGCAGGAGAGTGAAGAGTTAGTGATTAATGCCGTGGCCACCATCAACAACCTGTCTTTCTACCAAGGCGAGAGCTCAGTGGTCCGttcccagcacacacacatctcacagtTGCTACTAAAGCTCTTGCTGAGCTCCAGTATGGAGGTTGTTTTGGAGGCCACACGTGTGTTTGGAAATCTGTCGCAGATCAAAGACGTGAGACACTTCATCGTGCAGCACAAAGTGGAGCAGTATGTGGTAACCCTCCTGGACTCCAAGACCCCTgatgtgtgtttctctgcatGTGGAGTTCTCATCAACCTGTCTGCAGATCCAGACAACAGGGCCATGCTGAGGGCCACGGGAACCGTCCGGAAGCTTATTGACTGTCTGCGTGACTTTGGGCCTCAGGACTGGCATTTAGCTGCTGTGGTGTGTCAGACTCTCTGGAACTGCTCTTTAGGTGGAGAGCTGCAACACACTCAAGAGATGTTGGAGATATTGCGGCTTTACGTTGACAGAGGAGCTTTGCAGTGGCCTTCTGATGATGGAGTCAGACAGGTTCAGgaagcatgctgggaacttCTCTTTTTGCCTGTAGCTGAGAGGCTTAGACAGCGTTTTTATATCGAAGACACTACTGGCATGATTTCGTAAGCTCCACTGACACGCTCCTGCTCTCTAGATGTCACAcgcttgtctgtgtgtgtatatatgtaccgTATGTTCACCTACAAGCCGAGGCATGAGTCGGTGTGTATATTGCactttaatataatgtttcttcggatattttgaatatatgttTCAGAAATTTGTCctaatttaccttttttttttttttacaaaatagttcaaatgtttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205451 lncRNA downstream 178 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA downstream 5101 16889939 ~ 16891460 (-) True G139148
TU205448 lncRNA downstream 36305 16859343 ~ 16860256 (-) True G139147
TU205435 lncRNA downstream 51393 16843218 ~ 16845168 (-) True G139139
TU205289 lncRNA downstream 441158 16454884 ~ 16455403 (-) True G139032
XR_006247281.1 lncRNA upstream 131715 17043647 ~ 17116946 (-) True LOC122325296
TU205685 lncRNA upstream 211954 17123886 ~ 17124259 (-) True G139300
TU205686 lncRNA upstream 212891 17124823 ~ 17125248 (-) True G139301
TU205687 lncRNA upstream 213505 17125437 ~ 17125910 (-) True G139302
TU205702 lncRNA upstream 424075 17336007 ~ 17336320 (-) True G139317
XM_043219078.1 mRNA downstream 37951 16855295 ~ 16858610 (-) True cep57l1
XM_043219077.1 mRNA downstream 37955 16855295 ~ 16858606 (-) False cep57l1
XM_043219426.1 mRNA downstream 56499 16814705 ~ 16840062 (-) False grm1a
XM_043219423.1 mRNA downstream 56499 16814705 ~ 16840062 (-) True grm1a
XM_043219427.1 mRNA downstream 56499 16816599 ~ 16840062 (-) False grm1a
XM_043219287.1 mRNA upstream 9706 16921638 ~ 16947178 (-) False foxo3b
XM_043219286.1 mRNA upstream 9706 16921638 ~ 16947178 (-) True foxo3b
XM_043219290.1 mRNA upstream 37497 16949429 ~ 16970041 (-) False afg1lb
XM_043219289.1 mRNA upstream 37497 16949429 ~ 16970041 (-) False afg1lb
XM_043219288.1 mRNA upstream 37497 16949429 ~ 16970041 (-) True afg1lb
TU205287 other downstream 434345 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 529789 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 531094 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 533249 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 860308 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 434874 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 513936 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 898342 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1431540 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1494095 18406027 ~ 18446949 (-) False G139706

Expression Profile