RNA id: XM_043219287.1


Basic Information

Item Value
RNA id XM_043219287.1
length 2776
RNA type mRNA
GC content 0.51
exon number 4
gene id foxo3b
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16921638 ~ 16947178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTCCAGTCACTCAGTCCTAAGTTGCGCTCGCTTGAGTGCTGACAGACGATTAGAGGAGATAGTCCTACTGTGCCTTTAGACACACAGATCAGTGCAGAGAGAGAACGGGCTTCCTGAATGGGGAATTTTCCGCAATGTACCGTTCGTGACGTCGAGGCACTGGCGCGCGCTCTAACGAGACACTGTCATTAAGCCGTAGTTGCGTCTCTACCTTTAATTGTTAAAGAGACTTCGGAATGCGAAGAGACATCGGGTCAAAGTGGCTAATGACACAACGCGATCAGTGCGGTCTACGGGCACGCGTAAGTCTGCCCTCGTTATTGTAGTTGTCTTGATCTGACACAACGGCGTTTTGGATCTAACCCTCTGAACGTGCGGTGGCTCTGACAGTTCAGTTCTTTTGTCACTAGAGTGACTTGCTACTTGTGATGTAGTGCAGTGACGTTGTGGCGCTTTGTCCGTGGCTACTGGCGAAGTGCGCTGGAGAGATATAGTTGTATTACATCAGTGCACCAAGTGACTGGAGTGCGACACAGAAGACAAGAGAAACGGCTCTGGCTGAATGGAAGGGGAGTTAATTATCATTGAGATTTGCACTAGTCGCTTTAAGAAGCATTTAAGCACCATTTAGATTAGAGGTGCATTCATGGAATGCGACTGTGACCGTTTCCCACTGCCTATTTAACTTTGACCAAGACTGTACAGAGGAGCATCATAGAAGGCTGGTAGAGGTGATGGCAGAGACAACTCTGGAGCCGCTGTCCTCTCTGGATGTAGCCATCGATCCGGATTTTGAGCCACAGAAACGGCCGAGATCATGCACTTGGCCCCTGCCAGAGTCCAGCTCAGCAAAGCCTGCATCCAATGACACTGACATAATCCCggaggaagaggatgatgaggatgacAATGCGATGGCAATCAACGCCAACAGCGCGGGTGAAGGAGAGGACAATGGCAGCCCAAGCCTGGCTGAGGAACTCCATCCCGCGAGCGGTCAGGAAAACATGGGCTCCCCGCTTTCTTCTCATCCCACTTCGGCGACCACAGCGAGTCCGGAGGCGAGCGGTCAGGGCAGCCAACAGCAAACTCCCCGAAAGTCATCTTCGAGGAGAAACGCATGGGGCAACCTGTCCTACGCAGACCTTATCACAAAAGCCATAGAGAGTGCCCCAGACAAGAGACTGACACTGTCCCAGATCTACGACTGGATGGTCAGAAGCGTCCCGTACTTTAAAGACAAAGGCGACAGCAACAGCTCAGCTGGGTGGAAGAACTCCATCCGGCATAACCTGTCCTTGCATAGCCGTTTTATCCGTGTACAGAATGAGGGGACTGGAAAGAGCTCATGGTGGATGATCAATCCTGAAGGGGGCCGGGGAGGTAAAGCGCCAAGGCGACGTGCAGTCTCCATGGACAATGGTAACAAATACACCAAGACTGCACGTGGGCGTGCAGCCAAGAAAAAGGCAGCGCTGCAGGCTGCCCAAGAGGGTTCGCTGGAGAACTTATCTGCTGGTGGTCTGTCCAAGTGGCCAGGAAGTCCCACTTCCCGGAGCAGCGATGAACTGGAATCCTGTTGGACTGACTTCCGCTCACGAACAAACTCCAATGCTAGCACCCTGAGTGGACGCCTGTCACCTATCCTGGCCAATCCAGAGCTTGATGATGTTCCAGATGGCCCACCCCTGTCTCCAATGCTCTACTCCAGCCCCAGCAGTCTTTCTCCTCCCTCATCGTCTTCATCAAACTCCAAAACGTGCCCTGCTGAACTTCCAGGGCTAGCTGACTTGACTGGCACAATGAATCTCAATGAGGCCGACAACCTAATGGTTGATCTGTTGGACAACATCGCCACACAAGTGCAGGTAGTTCAAGGGTCTTCTGCATTCAGTTTTGGGACCAAGAGCACCACATCACCCACAAGCTCCTCTTCATCCCAAACTGTGAGCAACAACACCGGAGGATTCAGTAACACCATTTTTGGGTCTCCAGCAGGAGGCCTACGTCAGACGCCCATGCAGACCATCCAGGAAAACAAGCAAACATCGTTCTCCAGCGTTTCTTGTTTTGGGAATTCACTTCAGGAGCTGCTGAATTCTGATTCTTTGGTCACGCACAGTCACAGTGATGTCATGATGACGCAGTCTGACCCACTTATATCGCAGGCCAGTGCTGCCGTCACCTCTCAAAACTCCCGTCTTCGCAATGGCCTCATGCTGCGTAATGATCCCATGATGTCATCTTTCAGTTCTGTGCTCAATGGgcgaagcagccacctccaGAACAAGCAACAGGGGCCCAGTGTCCAGGGTTCTTTGCGTTCCCTCTCCAACAACAGGGCACAAAGTATAGCTAACGATGCTAATAATTTAGTCTCTGCAAAACAGCACCTCCAGCCACAACCCTCCATGTTGATGACCGAGAATTCGCTTTACTCTGGCCTGAACGGAAGTAACGGGGTGGGGATCTGTCACCCCTCAGGAACAGAACGTTTTCCATCAGATTTGGACCTGGACATGTTTAATGGCAGTCTGGATTGCGATGTGGATTCCATAATTCGCTCAGAACTAATGGACTCTGATGGACTGGACTTTAACTTTGATGCGTTGGTGCAAAACGCTGTTAGTCTGAATCCTGTGGGAAACTTCACCGGGACGAAGCAATCCACTCAAAGTTGGGTGCCTGGCTGACCGCAATCACATAGGCTCAGAACTGCAGAGAAAACAACAAACGATAGAATAACAACTACAAAGAAATATCCtgcacaaaa

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0048513 animal organ development biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0009888 tissue development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0008286 insulin receptor signaling pathway biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0009790 embryo development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205451 lncRNA downstream 25255 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA downstream 30178 16889939 ~ 16891460 (-) True G139148
TU205448 lncRNA downstream 61382 16859343 ~ 16860256 (-) True G139147
TU205435 lncRNA downstream 76470 16843218 ~ 16845168 (-) True G139139
TU205289 lncRNA downstream 466235 16454884 ~ 16455403 (-) True G139032
XR_006247281.1 lncRNA upstream 96469 17043647 ~ 17116946 (-) True LOC122325296
TU205685 lncRNA upstream 176708 17123886 ~ 17124259 (-) True G139300
TU205686 lncRNA upstream 177645 17124823 ~ 17125248 (-) True G139301
TU205687 lncRNA upstream 178259 17125437 ~ 17125910 (-) True G139302
TU205702 lncRNA upstream 388829 17336007 ~ 17336320 (-) True G139317
XM_043219285.1 mRNA downstream 9706 16896561 ~ 16911932 (-) False armc2
XM_043219284.1 mRNA downstream 9706 16896561 ~ 16911932 (-) True armc2
XM_043219078.1 mRNA downstream 63028 16855295 ~ 16858610 (-) True cep57l1
XM_043219077.1 mRNA downstream 63032 16855295 ~ 16858606 (-) False cep57l1
XM_043219426.1 mRNA downstream 81576 16814705 ~ 16840062 (-) False grm1a
XM_043219290.1 mRNA upstream 2251 16949429 ~ 16970041 (-) False afg1lb
XM_043219289.1 mRNA upstream 2251 16949429 ~ 16970041 (-) False afg1lb
XM_043219288.1 mRNA upstream 2251 16949429 ~ 16970041 (-) True afg1lb
XM_043218838.1 mRNA upstream 37166 16984344 ~ 16991803 (-) True nr2e1
XM_043219622.1 mRNA upstream 205165 17152343 ~ 17286892 (-) True nbas
TU205287 other downstream 459422 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 554866 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 556171 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 558326 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 885385 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 399628 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 478690 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 863096 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1396294 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1458849 18406027 ~ 18446949 (-) False G139706

Expression Profile