RNA id: XM_043219290.1


Basic Information

Item Value
RNA id XM_043219290.1
length 1723
RNA type mRNA
GC content 0.43
exon number 10
gene id afg1lb
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16949429 ~ 16970041 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTCAATAAAGTTattaggttttgaataaatATGGCGGCATGTAGGTTACGGTGGACAACGAGATGTCTTTTCAGATTTACATCCGAAAGGATAAGTTTGTTGAGCGGagtttggggtgaactgttTAAGGCTGTCAGAGGACATACAACTTTGTCAGCACCGTGGGCTGCTCATGGCAGACTCATCAGCCACTATGACAGCCTTGTACGCTCCCGTTCACTGCAAGGGGATGATCAACAAAGAGCAGCACTTCTTCAGTTAGCACAGTTAAACAGAGTGATGACAGACTATACCAACATCCCCATCCTTCTCCCTCAACCTAAAGACTACCCACCTAGTCCACCCACCTCCGAACTAAAGAATAATACAAGTAACGTAAACCTTTGCAGTCCTGAAGACATGTCAATTGAAAAAGAAGACAACACACAAGAGGGGTTTCCAAAGCCACGTCCTCCCCTCGGATGCTATATCCATGGCAATGTTGGCACTGGAAAAACAATGCTGATGGATCTTTTTTACTCATTTGTGGAAAACCGAAGAAAAAGGAGGGTTCATTTCAATGCATTCATGTTAGACGTACACAGAAGGATCTACAAACTGAAACAGAGCCTGCCAAAACGACGGATTGGTAAAATGACAATGTATGACCCCATCTTTCCGGTTGCCATGGAGATCGCAGAGGAAACCTGTCTCCTATGCTTTGTCGAGTTTCAGgtgGTGGATATATGCAACGCTGTCATTCTGAAGCAGTTATTTGAGGGTTTGTTCAAGTGTGGGGTTGTGGTTGTGGCAACCTCAAATCGACCACCTGAAGAACTGTACAAAAACGGGCTTCAGAGGGCTGCTTTTGTGCCTTTCATTGGCGTACTCAAGCCACTGGGTGCAGGTGATTATTTAGAAATCGCTCGGCAGTTCGACACGGTCATTATACGGAATGTTCCTCACTTTCGAGTCGGAATGAAGGACCAGGCTAGACGCTTCACCACACTCATTGACAACTTTTATGACCAAAAGGTTAGAGTGGTGATATTGGCTGATGCCCCGTTACACCGCCTCCTTAATCAGGGGCCGATGACTGGAGAGGAAGCAAGAGATCGCCTGATGATAGATGAACTGGGCCTGACCGATGAAGCCAGTGAGAGGCTGGCACTGTTCACAGCAGACGAAGAGGTCTTCGCCTTCCAGAGGACGGTATCTCGCCTCACAGAGATGCAGACAGAACAGTACTGGCTAAGTGGAGATCGGAGCGTGAACTGAAACCCCCATGCAGCCGACTACCTCTTAATAGAGAGAATAGGAGAGTCTTTGTGGCCCCCCCAAAACATTTGGGAGGGTGCATTTCCATCAGTAAAAACCGCCTGTAAGCCTTatcttgttcatttaaaagcaagTGGAATCGTCCATGTGCTCACatcactaaaactaaattatcaGGGACCGCAGGCCAATGCATGTGATGATAAGATGATGTCTAGCACCCTCTAGTGGATCATGTATTCTGTTGGATTTAGTACATTATgacctttttaaatacactctTACTGTGGGagagggaaaaatatatttatatttaaatgtttgatgtgAATTTATAGTTATTCTTACTTGaatataaaagcatatttaagtaataataaatgagataaaagttaaaataataaattgtatctACAATAAATTGTAactaattatgagataaataaaataataaataaatttac

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205444 lncRNA downstream 2889 16850554 ~ 16946540 (-) True G139145
TU205451 lncRNA downstream 53046 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA downstream 57969 16889939 ~ 16891460 (-) True G139148
TU205448 lncRNA downstream 89173 16859343 ~ 16860256 (-) True G139147
TU205435 lncRNA downstream 104261 16843218 ~ 16845168 (-) True G139139
XR_006247281.1 lncRNA upstream 73606 17043647 ~ 17116946 (-) True LOC122325296
TU205685 lncRNA upstream 153845 17123886 ~ 17124259 (-) True G139300
TU205686 lncRNA upstream 154782 17124823 ~ 17125248 (-) True G139301
TU205687 lncRNA upstream 155396 17125437 ~ 17125910 (-) True G139302
TU205702 lncRNA upstream 365966 17336007 ~ 17336320 (-) True G139317
XM_043219287.1 mRNA downstream 2251 16921638 ~ 16947178 (-) False foxo3b
XM_043219286.1 mRNA downstream 2251 16921638 ~ 16947178 (-) True foxo3b
XM_043219285.1 mRNA downstream 37497 16896561 ~ 16911932 (-) False armc2
XM_043219284.1 mRNA downstream 37497 16896561 ~ 16911932 (-) True armc2
XM_043219078.1 mRNA downstream 90819 16855295 ~ 16858610 (-) True cep57l1
XM_043218838.1 mRNA upstream 14303 16984344 ~ 16991803 (-) True nr2e1
XM_043219622.1 mRNA upstream 182302 17152343 ~ 17286892 (-) True nbas
XM_043219623.1 mRNA upstream 182302 17152343 ~ 17286886 (-) False nbas
XM_043219275.1 mRNA upstream 444426 17414467 ~ 17424811 (-) True smek1
XM_043219276.1 mRNA upstream 444726 17414767 ~ 17424810 (-) False smek1
TU205287 other downstream 487213 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 582657 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 583962 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 586117 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 913176 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 376765 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 455827 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 840233 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1373431 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1435986 18406027 ~ 18446949 (-) False G139706

Expression Profile