RNA id: TCONS_00011073


Basic Information

Item Value
RNA id TCONS_00011073
length 200
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id XLOC_005102
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4089737 ~ 4129820 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGGGAGTATGATGAAATGATCCCTCCATCTCGTCCATTGAAGATGTAGATGCTACCCTTTCCATCCTCCTCTAACGGTGCACCAACCAGCACATCCCTATAACCATCACCATTCAGATCTGCTGGACTGGCCAGAGAAGAGCCAAAGCGACCCCTCTGACCGGCCATGCCCACCAGCACCACATCAGAAAAACTGAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011072 lncRNA downstream 224503 3860464 ~ 3865234 (-) True XLOC_005094
TCONS_00009895 lncRNA downstream 282917 3805655 ~ 3806820 (-) True XLOC_005093
TCONS_00011071 lncRNA downstream 303355 3782621 ~ 3786382 (-) True XLOC_005092
TCONS_00011070 lncRNA downstream 519656 3569747 ~ 3570081 (-) True XLOC_005087
TCONS_00011069 lncRNA downstream 545721 3519168 ~ 3544016 (-) True XLOC_005086
TCONS_00011074 lncRNA upstream 13774 4143594 ~ 4169699 (-) True XLOC_005103
TCONS_00010795 lncRNA upstream 60202 4190022 ~ 4194304 (-) True XLOC_005105
TCONS_00011075 lncRNA upstream 102037 4231857 ~ 4232505 (-) True XLOC_005109
TCONS_00011076 lncRNA upstream 145090 4274910 ~ 4287034 (-) True XLOC_005111
TCONS_00009932 lncRNA upstream 471529 4601349 ~ 4609507 (-) True XLOC_005124
TCONS_00009904 mRNA downstream 19679 4052180 ~ 4070058 (-) True XLOC_005101
TCONS_00009903 mRNA downstream 61658 3998764 ~ 4028079 (-) True XLOC_005100
TCONS_00009902 mRNA downstream 96898 3981346 ~ 3992839 (-) True XLOC_005099
TCONS_00009900 mRNA downstream 111395 3964351 ~ 3978342 (-) False XLOC_005098
TCONS_00009901 mRNA downstream 111431 3969503 ~ 3978306 (-) True XLOC_005098
TCONS_00009905 mRNA upstream 41101 4170921 ~ 4176329 (-) False XLOC_005104
TCONS_00009906 mRNA upstream 41195 4171015 ~ 4185554 (-) True XLOC_005104
TCONS_00009907 mRNA upstream 66673 4196493 ~ 4199728 (-) True XLOC_005106
TCONS_00009908 mRNA upstream 72006 4201826 ~ 4206869 (-) True XLOC_005107
TCONS_00009909 mRNA upstream 87358 4217178 ~ 4220713 (-) True XLOC_005108
TCONS_00009859 other downstream 2599149 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 3467448 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 156546 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 165729 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 168037 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 168407 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 1269860 5399680 ~ 5418340 (-) False XLOC_005137