RNA id: XM_043219299.1


Basic Information

Item Value
RNA id XM_043219299.1
length 3567
RNA type mRNA
GC content 0.44
exon number 16
gene id atf6
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17523618 ~ 17554947 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTAGAGTTACCGTAAAACTAGACGTGTACTTGCAGCATTGTTGTTATGTAGTTTCATCAGAATCGGGAAAGGCGAGTGTTTACAACTTCGCAAAAACTCCTCGATAACTAGCGTTCCTCACCCGACTCACTTTTAATCCTCACTAATGTGTTCGTGGCACGATGTCGTCAAATTTGATGTTAGATTTCGTAAATCCATCGATGATGAATAAGGAAGCGGGGGATATTTCCATCGATCAGGATGGAGAGTGGGATATCAGTTTGTTTGATGAGCTGGAAGATCTCGGGGGTGCTGACGAGTTTCTGGAGGCTCTGGTGGAAAGTGTAGGCTATGACACCTCTGTTCCTGACCTGAACTTTGGCATTGAGCCCACTGCGTGGAACTCCGATGCCTGGAGAGAAAACGGTAGCCCGCAATCAGATGGTGATATAACCGTGGACTCCCTGTCACCAAACCACACGCTCAGTTTCGTGTCCTCGCCAGCGTCGGTGGAGCCCCACTCACCGTGCTCCACACATgATGAGGCACTGTCTCCAGTCTCCTGGCGTTCTGAACCCTCTCCACTGTCTGTCTGCTCTGACTCGAGCGGCTTTGCTGAGGTGTCTGCTGAGAAAAAGCCTTCCAAGAGGACCAGTCAGTCAAAAGCCAAACCTCTCCAGCCAGCGAAGAGGCCCATTCAGTTCAGCCCCAAGGTCTCCATTCAGCCTAAACCGCTCATCACGGCAGTACCCATGTCCCATGCTGCAGCTCCCCTTCAGACTAAGACCATCATCATCCAGCCTCTTCAGACTACAGTTCTGCCTGTAGTAAAACCTCCACCAGTCACCATTCAACCAGCACCCCCTGCAGGTCAGCGAATGCTGCTATCTCAGCCTACTCAGGTGGTCCAGCTTCAGACGCCTCAGGCGGTGCCCACGCATGTAGTCACAGTGCCAGCACTGGCTCAGGACCGATCTGTCTCTGTTGTTGCACCGGTAACGGCATCTCCTGTGGTTGCCATGACACTGCAGAATTCCACCCCTGAGGATGATtcAAGTGCGTCTCGGAGACAGCAGCGCATGATAAAGAACAGAGAGTCTGCTTCTCTCTCCcggaagaagaaaaaggagtATTTGTTGACATTGGAGGCCCGTCTGAAGGTGGCGCTCTCTGAGAACGAGAAGCTGAAGAATGAAAATGGCACATTAAAAAGACAAGTGGAAGGACTGATGAGTGAGAACACTGTGCTGAAAGCAACTGCTCCAAAACGGAGAGCTGTGTGTCTTTTGACGGTCATGGTCTTCTTGGTCTTTAACTTGGGTCCAATGagTCTACTTGGAGGAGACAGAGGGTCTACATTTCCTGCTGCCCCTGCTTTCAGTGGCAGACACCTGCTGGGCTTTTCCCCAGAGTCAGAGAGAAACTTTGAGTCAGACAGGCCTCAGACTGATCCCTCTAACCCTGTGAACAGgTTAGAGGATGTAGTATCAGAGCAGAAGGCACTGATGGTGGTGAAGAATCCTCTCTATTTAAGAACCCCACCACCCTGCCAGCCACCTGTCAACAGGACCAAGTGCATGAAGATAGCGCATGAGCTTAGGGGCTGGGTGCATCGTCACGAGGTTGAGCGGACCAAAACTCGCCGCATGAGTAACACTCAACACAGAGGCAGAACCATCCTGcAGAAAGCAGCAGATAAACGGGCTGAAGTACCACAGATTACAACACAGATCCAGTACACAGATTCCTCTGAAAAGACTCCCAGCAGCGAGCTGCAGGTGTATTACGCCCCTCGCCGCACTTACAATGACTTCTTTGATGAACTCAACAGAAGAGGGGACACGTTCTATGTGATCTCTTTCCGCCGGGATCACCTCCTTCTTCCCGCCACCAACCACAATAAAGGCAGCCGCCCCAAGATGTCTGTGGTCCTGCCAGCTATGAATTACAATGAGAGCATCATTAAAGACAAAGAGTTTGAGGTGATGATGCAGATCGACTGTGAAGTCATGGACACCAGGATACTCCACATCAAGTCTTCTACTATTCCACCCATCTTGCGGGTCaatcagacagacacagactcTTTCTATCACACGGCCCCCAACAACAACCAGCCGGCGGCCCCCGTCGGTGTCCTCATGGGTTCTTCTTAGTCTCAGCTATATACATCTTATCAATTTCGTTTTGTTTGGACTTACCTGTTTTTTCACCAACATCTGTTTTGTTACATAATAagcattttgttaatttttgtgACTTTTATTCTAGTGGCTAACCAGTATCTTGGCAGTCCACTACCAAATCACCAAGATACTTAACAATAGTCAAGAATTCCACTTGAAGGCACTTCTTCCAAACGCACCATGTAAGCCATTTAATACTGATAAGCCATTCAATACATTACAATCTTTATTACAGGATATTGATTTCACCAACAACAGGCATTTACACTTTATGCAAAGTGACTTGAGTTTGTTTGTGCTCTACCAGCTGAATTACAACGACTAGGTGCAGTCTGACTCgatttattgaacatttttctGCTATATGTGGTAGCTGTCaaggagttgttttttttttttttttttttttttttttttttgcactttgcttgtttattaaaatgaattcaaatgaatatttatgaagGTTTAATATTTGTACCAAGCTTGTTTTGGTAGACATTTAATGGTCGTGTTCAgcgacacatttttttttaataccactATCCTCAAACAAACTGCATTGTCAGcgagttttgtttttctgatttatgataTTGCTATTGAATAGAAAAGTTAGAAGATTTATTATTTACGCTTGAGTCTATGTAATTGACTTTCCATTTGACTGATATTATTCAGGACGGTGCTGTAAATGTATAtcgaaaaatatatatttgaaagtatttagATAATACTTCTGCTCTATGCTGGGTCTTTGAAGGGTAATCATTTTAGACTAATTCTAATTGGAATAGCAGTTTGGGGTTGGGGGTCTTATGCAACATCTGtcagttcattttaatgtgtttcatGCCTCCGTGTTTTTCTTAGTGGCTTAATTGCACTTTAAATGAGGTGTGCTTGACATAAATACAGTTGTTAACATATTACTGGCTGTTCATTTGAAGTTGTAGAAAAGACCTAATtgttatttgtaatttgtatCCCATCTGTCCTTGTTCACTGTATGTCTGTCTCTATTCTAGCTTATTTAGAAGTGCACTTGTTTCTTGTCCTGTTTAGGATGACGATTAGTCAATTATCAGTCAGTAATCTGTGTGATCGTTAGCTTATTCTTTCCCATCCGTCATCACCTTtaccggaaaaaaaaaatatatttagaattttagtttttaaactcAACTCAGGTGAATCTTTGTCAAAATGTGGatgatttattagtatttttagtgAGAATTTCACATTTTGTCCTTGGCATCACAGTAGAATTGTCtcgtttatttttctttctggcagcgtttttgttttttatataattaatttctgcattttcgCAAAGATTGATGGCGATGAAAGCCGTTTTGTTACAatgcaaagaaataaacactggACTCAA

Function

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09054 ATF6A; cyclic AMP-dependent transcription factor ATF-6 alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247186.1 lncRNA downstream 114123 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA downstream 114123 17397428 ~ 17409495 (-) True LOC122324490
TU205717 lncRNA downstream 127620 17394864 ~ 17395998 (-) True G139323
TU205702 lncRNA downstream 187298 17336007 ~ 17336320 (-) True G139317
TU205687 lncRNA downstream 397708 17125437 ~ 17125910 (-) True G139302
XR_006247201.1 lncRNA upstream 908 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA upstream 908 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA upstream 908 17555855 ~ 17559470 (-) True LOC122324574
TU205818 lncRNA upstream 60201 17615148 ~ 17615699 (-) True G139386
TU205819 lncRNA upstream 60846 17615793 ~ 17616508 (-) True G139387
XM_043219652.1 mRNA downstream 8138 17499479 ~ 17515480 (-) False fam102bb
XM_043219651.1 mRNA downstream 8147 17499479 ~ 17515471 (-) True fam102bb
XM_043220564.1 mRNA downstream 42084 17455737 ~ 17481534 (-) True rock2b
XM_043220573.1 mRNA downstream 68181 17453042 ~ 17455437 (-) True LOC122325537
XM_043220567.1 mRNA downstream 83641 17428506 ~ 17439977 (-) False paplnb
XM_043219098.1 mRNA upstream 31437 17586384 ~ 17595986 (-) True LOC122324570
XM_043219099.1 mRNA upstream 34750 17589697 ~ 17595986 (-) False LOC122324570
XM_043219105.1 mRNA upstream 42446 17597393 ~ 17602425 (-) True LOC122324572
XM_043219097.1 mRNA upstream 48711 17603658 ~ 17608945 (-) True LOC122324568
XM_043219095.1 mRNA upstream 48711 17603658 ~ 17608945 (-) False LOC122324568
TU205714 other downstream 95547 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 95547 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1061402 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1156846 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1158151 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 255327 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 788525 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 851080 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 851807 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1521099 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile