RNA id: XM_043219315.1


Basic Information

Item Value
RNA id XM_043219315.1
length 3845
RNA type mRNA
GC content 0.49
exon number 7
gene id fzd3a
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18214570 ~ 18231055 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCGACCACAAATCAACAGCGCCAACTTCATTTCATTATAGTACCGAGACGCTCCTCGCTCCCAACGGCCCTTTGGCCACTGCGTGCTTTATCCGCGGATAAGCTGAAGCCATTAAATATTTGCGTACTGAATGTGTCTTTTCACGCTCAATCCAGTGACGTAAGTCCTATTATGCTTTTATGTTGAGTGAGAGCAATATTCGTCGGCGCGTCATCGTCAAATGCGCGCGCCCGTACAAATCCTCCAAAACCTGCAGAAAGACACACAGGGCTCGTATTGTTGGAGAAACGAAGTGGAGTCCCACACGCGAAATATCCCCGCTGGAGCGATGTACGTTTTATAATTGCATGGCAACCGCGGCCATACCTACACTGGATAGTGGACACGCGCTGAAAAGACCTGGATCTGGCACAGCAAAATGGAGAAGCACACGCTATCTGTGCAATTTAAACATCAGATAATTCATGAAGGAATGGCAGAGCGCAGATTATCTTGATACAACCCATTCTTTGCAAGTCACAGCACAGACGGACACACCATGGATCTCCTTTGGGTTCTGTACTCCATGCTGACTGTATGTATGGCCATCAATATGGAAGCTACCGGGAGCCACAGCATGTTTACCTGTGAGCCTATCACATTAAGGATGTGCCAGGGCCTCGCCTACAATACCACCTTCATGCCCAACCTTCTCAATCACTATGATCAGCAGACTGCTGCTCTCGCCATGGAGCCCTTTCATCCCATGGTGAACTTGGAGTGCTCTACTGAAATTCGCCCATTCCTGTGTGCTCTTTACGCCCCTGTGTGTACCGAGTACGGTCACGTGACCCTGCCATGTCGGCGCCTGTGCCAGCGGGCCAAGAGTGATTGCTACAAGCTGATGGACATGTTTGGGGTCATTTGGCCAGATGAGATGGACTGCAGCAGGTTCCCAGACTGTGATGAGTCTTACCCTCGAGCGATAGACCTTCTCCCGAGCAGTGACGGGACCGAGGAGTCTCCCTCGTCGGTTCAGCGTGACTACGGCTTCTGGTGCCCACGAGAGCTGAAGATCGAGCCTGACTTGGGTTACTCGTTCATGGGCGTGCATGACTGCTCACCTCCCTGCCCAAACATGTACTTCCGCAAAGACGAGCTCATTTTCGCCCGCTATTTCATCGGTGTCGTCTCCATAGTCTGCCTGTCGGCGACGCTCTTCACCTTCCTGACCTTCCTCATCGATGTTGGCCGCTTTCGCTATCCTGAGCGGCCCATCATCTTCTACGCGGTCTGCTACATGATGGTGTCCCTGGTCTTCTTCCTGGGTTTCCTGCTGGAGGATCGCGTGTCATGCAACGCGGCGAGCCCGGGTCGTTTCCGCGCCTCCACCGTCACCCAGGGCTCCCACAACAAGGCCTGCACGCTGCTCTTCATGACCCTTTACTTCTTCACCATGGCAGGAAGCGTTTGGTGGGTCATCCTCACCATCACCTGGTTCCTGGCGGCCGTTCCCAAATGGGGAAGTGAAGCTATCGAGAAGAAGGCTTTGCTGTTCCACGCCGTGGCTTGGGGTGTCCCGGGAGCCCTTACTATCACTCTCATGGCTATGAACAAAATCGAGGGCGACAGCATGAGCGGCGTTTGTTTCGTGGGGCTCTATGACCTCATGGCTTTGCGCTGGTTCCTCTTGGTGCCTCTCGCGTTGGATGTGGTCGTAGGTGTGGTGCTGCTGTTAGCGGGGATTGCTGCACTAAATAGGGTCCGGATGGAGATTCCCTTAGAGAAGGAGAACCAGGACAAACTGGTGAAGTTCATGATCCGGATCGGCGTGTTCTCCATCCTGTATCTGGTGCCTCTGCTGACCGTCGTCGGATGCTATCTGTATGAACAGAGCCACAGAGCAGTTTGGGAGACCACTTGGGTGCAGGAGCGCTGTAGAGAGTATCACATCCCTTGTCCGTTTAAGGTGGAACAGACAAGCAGGCCAGATATCGCCTTGTTCCTCATCAAGTACCTGATGATGCTGGTGGTGGGTATCCCGTCAGTGTTTTGGGTCGGCAGTAAAAAGACCTGCTTCGAGTGGGCCAGTTTCTTCAACGGGCATCGCAGGAAAGACGCGGTGAACGAGAGCAGGCAGGTGCTGCAGGAGCCCGACTTCACCCAGCTCCTCCTCAGGGACCCTAACACCCCAGTGGTGAGGAAGTCTAGAGGCACCTCCACACAGGGCACCTCCACCCATGCCTCTTCCACGCACCTCGCCATGTTGGACGAGCCCCCCAGTGCCAGCACGAGCCGCGCTGGCAGCATGCGCAGCAAATCAAGCAGCTTCCACGGCAGCCTGCATCGCTCCAGAGATGGCAGGTACACAGCTTGCAGTTACCGCGGCGTCGAGGAACGTCTTCCTCACGGGAGCACCCTGCGTCTTAATGATCCGCTCCAGCACTGCGGCGTCAACCGCCTCGACAGCCATTCACGACACGGCAGCCTGCAGCGCCTGGAGAGCCAATCACGGCACAGCAGCGTGCGAGACCTCACCATCACAGCACAGGCCATCCAAAGCAGCCCCGGCAACGGCATTCACCGCGTCATAGAGGAGGACGCCACCAAGGCCTGAACTTTCACACGGCGGGAAGTAGAGACCTGACGTGTAAAGGGAACATGGACTCTTCTGGCACAAACTCCTCGTGATAGAATACATGCGTTCAGACCACACCGTGTGCCGTTTCCCGGGAACTGAACACTTGCAGGTGGTAGCATTTTGTGCTACGCAAACTTCTTGAACACATTTACTTAAGACTTTCGATCAAAGGTTGTGAAGTTCAGTAACGGACTACACCAAACACTTGAAATCTTTTGATGTAaaactaccattcaaaggtttggggtcagtacttTCTACAGATTtctaatttcaaatgaatgctccagaacaaataaatgcagccttgttgtgAATAATAAACTTCTTTTTAAATCTCACCCaccccaaacgtttgaatggAAAGTATATGTATCTTTTCTCAAGTAAAATCTGCGTGGAACCTCTTATTAAAGGGTTCCTGCAATAACAGGGTCAAAAGTAAGGGCTTTTGATACGTCATCTTTCTGTGATGTATCCAGGCACTTGCTGTTTTATATACTTTCCGAGTTGTTCCACTACAGATGTGGTTCTGAATGTTTCTTTCTATTGTTTGTTGCACTTTTGACCATTTTGTAGAACAGAACTAGTTACGAAGATGGACATCTCCTCACATTTGGGCTAAATTTCAATAGATGATTCACCCCAACacgaacattttgtcatcatctaCCCGTCATTCGTTACGCTTCAAACTTGTACGATTTTCTGTTTGTCCTGTGGAACGGAAAAGGAGATGTTCAGGAGAATGTACAAGCTCCTCGTTTCCATACAAGGATAGTGAATAGTGACCAAGGGCTgtgaagttaaataaaaaaaaagataaaacgtagcataaaaacataaatgactcACTTGCATTACATTGCAATTCCTCTGATAAttgcaggggaaaaaaacattcagtcaaTAATTGTTTCCAGTGCCAAAGTCCTAAATTTGAGggtgaaaaaatgaaaaaaaaaaaaaaaaaaaaaagaagtcattttTCCCATTGAAAAGCATGAAGagctcaatttaaaataaacctaaaacaaaaaaaaatcatcagttATTTTAGAATAGATTATGGTAAATGGGCATATCCTTCACAACCAAGCTCTTCTCTGTTGAGTTTTAGCACTAATGTTTAGTCGTTTACCGGAAActgtgaaaagcattttttataaCATGTTCAGAAATCCTGCTTTacgtacaaaataaaacatcactCTCAAAACGTC

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007199 G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger biological_process
GO:0001736 establishment of planar polarity biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0001843 neural tube closure biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0001944 vasculature development biological_process
GO:0021754 facial nucleus development biological_process
GO:0032589 neuron projection membrane cellular_component
GO:0030424 axon cellular_component
GO:0030425 dendrite cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0045177 apical part of cell cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206183 lncRNA downstream 34383 17888568 ~ 18180187 (-) False G139590
TU206184 lncRNA downstream 34383 18107544 ~ 18180187 (-) True G139590
TU206271 lncRNA downstream 47839 18166126 ~ 18166731 (-) True G139653
TU206266 lncRNA downstream 56923 18156801 ~ 18157647 (-) True G139651
TU206185 lncRNA downstream 107167 18087212 ~ 18107403 (-) True G139591
TU206313 lncRNA upstream 24803 18255858 ~ 18290820 (-) False G139681
TU206311 lncRNA upstream 80301 18311356 ~ 18313605 (-) False G139681
TU206315 lncRNA upstream 80301 18311356 ~ 18313605 (-) True G139681
TU206317 lncRNA upstream 80301 18311356 ~ 18313605 (-) False G139681
TU206339 lncRNA upstream 108219 18339274 ~ 18339510 (-) True G139700
XM_043220435.1 mRNA downstream 51245 18161260 ~ 18163325 (-) True lft1
XM_043220328.1 mRNA downstream 62897 18134188 ~ 18151673 (-) True kif26bb
XM_043220333.1 mRNA downstream 81342 18123631 ~ 18133228 (-) True cnstb
XM_043220335.1 mRNA downstream 81545 18123631 ~ 18133025 (-) False cnstb
XM_043220334.1 mRNA downstream 82619 18123631 ~ 18131951 (-) False cnstb
XM_043219845.1 mRNA upstream 94872 18325927 ~ 18331052 (-) True pla2g7
XM_043220580.1 mRNA upstream 112408 18343463 ~ 18350122 (-) False adgrf3b
XM_043220579.1 mRNA upstream 112408 18343463 ~ 18350121 (-) False adgrf3b
XM_043218608.1 mRNA upstream 123115 18354170 ~ 18363861 (-) True LOC122324297
XM_043218603.1 mRNA upstream 135712 18366767 ~ 18401190 (-) True adgrf6
XR_006247229.1 other downstream 390369 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 786499 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 786499 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1752354 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1847798 16364810 ~ 16366772 (-) False fndc1
XR_006247304.1 other upstream 112417 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 174972 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 175699 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 844991 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 1023755 19254810 ~ 19256255 (-) False batf3

Expression Profile