RNA id: XM_043219320.1


Basic Information

Item Value
RNA id XM_043219320.1
length 4234
RNA type mRNA
GC content 0.54
exon number 27
gene id atad2b
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22394835 ~ 22470270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGCTGACAgcagagggagaaagagagaaagagaaatggcGCCTCGGCACTCTACTAGCTGAGACACAGTCAGGAACGAAAGCAGCTGACAAGAGCTACAGGACAGGATCTGTCTATCAGCGGGGACAGACAGCAATCATGGTGAACACCAGAAAGAGCTCGGAGCACAAGCCCATCAGTCCATTCATCTCGGGCCGGACGAGGTCGTCTCAGAGGAGCAACCCAAACTTGGACGAGCACAACAGCCGTGTAAGGAAGAGAGAGACACCGGCAGCCTATTCTCTCCGCCAGCCGAAGGAGCCTAGCAGTGATGTTAACAGCAGTAGTCCACGTTTGTCCCCGCCACCCAAGCGGACACGCAGACAGACGCCACCAAGTTCTACTGATACTTCTCCAAGTCCCCAGAGTAAAGGCCAGAGAGGCCCATGGACCATGTCCAAACACTGTACTAGGTTGTCCACTGGTGCCTTGCAGAATGGACACAGTCGAATGAGTCTGAGGGGTGATTCTACATCAGATGGGGACCACGGTCGTATGAACGGTCATGTTGAGCTCAAGAGAAGCCGACGCGTCAGGAAGTCCCAGTTCGAACACCTTAATCAAAGTTTACTTTTCGACCAACTTGTCAACAGTACGGCAGAAGCAGTTCTTCAGGAGATGGACAATATCAGCAGCATACGGCAGAATCGGGAAGTGGAGCGCCTCCGCATGTGGACGGACACTGAACTGGAAAACATGGACATGTACTCCCGTGTGAAGAGGAGGAAATCTTTGCGTAGGAACACGTATGGAATGCAGGCGCATCACAAAGTCATGAGCAAGTCAAAGGACCCCGAAGAGGAGGAAGGAACTGAAGagtCTCACGAAGAGggagaggaggatgaagacgTGGAGGCCGATGATGATGAAGACGATGAAGGAGATGAGGCAGAAGAGGCTGGAGAAGAGAATGACAGACCTTATAACCTCAGGCAGCGTAAAACTGTGCAGCGCTATGAAGCACCTCCAATAGAGCCAGTGAACAGGAAGCAGAGCAAGGGCTCTCTGTTCGACACACACAGATCTCCTGCAAGAAGAAGCCATATTAGAGTAAAGAAACATGCCATTCACAGTAGTGAATCAACATCATCATCTGATGAAGAGCGCTTTGAGaggaggaaaagcaaaagcatgAGCCGAGCTCGTAACAGGTGTTTACCCATGAACCTGCGGGCAGAGGATCTGGCCAGTGGTGTTCTGCGAGACCGAGTGAAAGTGGGTGCTAGTTTGGCAGACGTGGATCCCATGAATCTGGACACTTCTGTGAAGTTTGACAGTGTTGGAGGTCTCTCCCATCACATTCAGTCTTTAAAAGAGATGGTCGTCTTTCCTTTATTATATCCAGAAGTGTTTGAGAAGTTTAAGATTCAGCCCCCAAgAGGATGTCTGTTTTATGGTCCTCCAGGAACTGGGAAGACGCTGGTGGCCCGAGCTTTGGCCAATGAATGCAGTCAGGGTGACAGGAAGGTGTCTTTTTTCATGCGCAAGGGCGCCGACTGCCTCAGCAAATGGGTGGGAGAGTCTGAACGACAGCTCCGCCTACTTTTTGACCAGGCATACCTCATGAGACCCTCCATCATCTTTTTCGATGAGATTGACGGCCTCGCTCCTGTTCGCTCCAGCAGGCAGGATCAAATTCACAGctCCATAGTGTCTACGTTATTGGCATTGATGGATGGTTTGGACAGCCGGGGGGAGATAGTGGTCATCGGTGCTACAAATAGACTCGACTCTATCGACCCCGCACTCAGGAGGCCCGGGCGCTTTGACCGGGAGTTTCTGTTCAACCTGCCAGATAAAAAGGCTCGAAAGCACATTCTAGAAATCCACACCAGGGACTGGAGCCCCAAGCTAGCTCAGCCCTTCATAGATGAGCTAGCTGAGAAATGTGTCGGTTACTGTGGGGCCGACATCAAAGCACTTTGCACAGAGGCTGCTCTAGCGGCTCTGCGGAGGCGCTATCCTCAGATCTACGGCAGCAGTCAGCGTTATCAGCTGGACGTGGGCTCCATCGTTTTGGGGCCTCAGGACTTTGGTCACGCGCTGCGCTCCATAGTACCTGCGGGTCAAAGGGCTCTGGCACCGCCCGGCCAGGCCCTTTCGTGTGTGTTGAAGCCCCTGCTGGAGCCCACGCTGGGCCAAACGCTGGCCTGCCTGATGCGAGTCTTCCCCCACGCAGAGCTCCTGCACAGGGAACACACACACGACACTGACAATCATCTGTTTGTGGAGGACTCATATAGCGAGGGCGAAGAATGTCTTGGTGCTCCTTCAATTTACGAAACTCAGTCAGGATCACTGAAGGAAGCAGCTTCCTGCACGACCCATAAACCATTTCTCCACTTTACCACttctgcCTACCAGCAGCCCACCTCTTACCGGCCACGGCTGCTGCTGACGGGACCCCAGGGCGCGGGGCAGAGCACACACCTGGCCCCTGCTGTGCTGCACCACCTGGAGAAGTTCACTGTGCACCGTCTTGACCTACCCACGCTATACTCCGTCAGTGCCAAAACCCCAGAGGAGTCCTGCGCTCAGGTGTTTCGTGAGGCCCGGCGCTGTGTTCCCAGCATCATCTACATGCCTCACATCAGTGACTGGTGGGAAGCCATCAGTGAGACGGTCAAGAGCAGCTTCCTCACACTCCTCCAGGACGTACCCTCGTTCACACCGCTCCTCATCCTCGCCACAGCAGAGACCGTCTACCAGCAGCTCCCAGACGAGctaaaATGCATCTTCAGTCGCTCATACGGGGAGGTGGTTTGTTTAAGCATGCCTGGAGAAGAAGCACGCAGGAAGTTTTTTTCAGACCTCGTTCTGGTGCAGGCAGCCAAGGCGCCACCTTGCAGGAGAAAAACCGTTACCGCTCTCGAGGTGCTGACCCTCGCTGAAGACCCTGGCCCTCGGCAGCTCTCACCAGAGGAGCAGCGGCGActggaggagcaggaggagaacACCTTGCGCGAGCTCCGCCTCTTTCTCAGGGACGTCACAAAGCGGCTCGCCACCGACAAGCGCTTCCAGATCTTCAGCAAACCCGTGGACATTGAGGAGGTTTCAGACTACCTCGAGGTTATCAGACAGCCTATGGACCTGTCCACCATCATGATGAAGATCGACACTCACAAATACACGGTCGCCAAGGATTTTCTAGTGGACATTGACCTCATTTGCAGCAATGCGTTAGAGTACAATCCAGACAAGGACCCTGGAGATAAAATCATCCGCCACAGGGCCTGCAGTCTGAAGGATACTGCTCACGCCATGATCGCCTCTGAACTGGACCCAGAGTTTGACCGCATGTGTGAAGAGATCAAGGAGTCCCGCAGGAAGAGAGCCTTTCAGACCACACCGCAGCCGCCCGTCACTCCGAGCGCTGTGGCAACCAGGAAACTTGTGGGAGAGGAGGCGGGATTAAGCAGTTCTCAGGGTGATGGAGTGGACAAGCACTGCAGCAATAACATAAAGCGCAAGTTGCGGCGGCGTCCTATTTGGGGACGGGGTATCATCAGGAAGAAAAAGATCTATAAAAAGGAGGAAGCGGAGGAAGATGATGAACcagaagaggaggagggagcAGACGACTCTGCTGCAATGGTGCAAGTTGACGCTTGTCTCACCCAGGACGAGTCATCCTGTGACGCCATGGAGCTCCATCCTGATAAACAACCACTCCAGGCCAACGGACACGTCCTCTCCACGGAGGAAGAGAATTCCTCTGAGCCAACGGCCACTCAGGACCCTCAGGGCGAGAAAGAGACCATGAAGGCTCTCTCGGAGGAGGCTTCCAGCAGTAAGGAGGCCGCAACAGTCCCTGCTCCTCAAGAGTGTTTGAATGGAAATGAATCTATGGACAGCGTGTACAGTGAGGCTCTTGATAAAGAAACCGAGGTAGACTCTATTAATAAAGATGCACTTGAAGAAGAGCATAAGGAGCCTTCTGCCTCAGAATGCAATGCGGAGGAGAATGTGACAGCAGCGGAAGGGACGGCATCTGATGGCGACCATGAAACAGAAGGGAGGAAAAAGTCAGACGAGATGGCCGTTGGACTTGAGGAGACTGTGGAACTTCCGCCACCTCCAGCTCTCGTGGTTGACCATCAGCGACTCAAGGTTTGATGGAGGGAATCTGCCATCCATGACCGTTCTCCCACAGTCAGTGACACTGAGACGAAGCAACGACCCAGAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208102 lncRNA downstream 291587 22112160 ~ 22112425 (-) True G140971
TU208101 lncRNA downstream 293143 22110663 ~ 22110869 (-) True G140970
TU208100 lncRNA downstream 297731 22105969 ~ 22106281 (-) True G140969
TU208095 lncRNA downstream 305673 22097906 ~ 22098339 (-) True G140967
TU208092 lncRNA downstream 321395 22081524 ~ 22082617 (-) True G140964
TU208233 lncRNA upstream 69097 22539367 ~ 22539567 (-) True G141078
TU208234 lncRNA upstream 69323 22539593 ~ 22539914 (-) True G141079
TU208235 lncRNA upstream 69650 22539920 ~ 22540327 (-) True G141080
TU208237 lncRNA upstream 70418 22540688 ~ 22541150 (-) True G141082
TU208238 lncRNA upstream 71193 22541463 ~ 22541694 (-) True G141083
XM_043219962.1 mRNA downstream 306807 22092072 ~ 22097205 (-) True gzf1
XM_043220027.1 mRNA downstream 345186 22053057 ~ 22058826 (-) True chgb
XM_043218684.1 mRNA downstream 397764 22001213 ~ 22006248 (-) True bmp2b
XM_043220548.1 mRNA downstream 467553 21935374 ~ 21936459 (-) True LOC122325511
XM_043220547.1 mRNA downstream 485208 21917818 ~ 21918804 (-) True taar11
XM_043219741.1 mRNA upstream 28475 22498745 ~ 22505802 (-) False LOC122324950
XM_043219740.1 mRNA upstream 28475 22498745 ~ 22505802 (-) True LOC122324950
XM_043219692.1 mRNA upstream 71507 22541777 ~ 22552274 (-) True opn8b
XM_043220550.1 mRNA upstream 87234 22557504 ~ 22567131 (-) True opn8a
XM_043219919.1 mRNA upstream 199772 22670042 ~ 22683646 (-) True clic5b
unassigned_transcript_2512 other downstream 288223 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 288892 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 290968 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 557095 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 562544 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 918899 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 920195 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 920197 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1321807 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1534417 24004687 ~ 24006665 (-) True G141502

Expression Profile