RNA id: XM_043219332.1


Basic Information

Item Value
RNA id XM_043219332.1
length 3937
RNA type mRNA
GC content 0.45
exon number 17
gene id rgs6
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14846009 ~ 14903495 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacacacacacacacacacacgcacgccaGGATCCTCACACTGTACCTGAGCACTCCACTCCACTCCACGCAGCGACCACCCACGCTGGGATCCAGTGCGCGCGGGAGACGGACACAGTGGAAGAAACCCACTGCTTTCCACAGCTGCACAGTCTCTTCATCATCTTCCCCccaccatcatcaccatcaccaccaccacaGTCTCTTCTAGCCAGTTAGATCATGAACCTGCTCTTTTCTGGTTGCTAAGGAGGGGAAATCGAGCTCCGAGGAGTGGACGAGGCGGTACTTACTAAGagacggacagagagaaCAAGAGACCAAACATGGCCCAGGCCTCTCAGGACCAAGGTGCAGTGGGCGTAGCTGACCCAGATGAGGATTCACCCAACATGATTGCTTACAGAAAGATTGAAGACATCATCACACGCCTCCAAGATGAAACCGAAGGTGTGCCTGTCAGAACGGTCAAGAGCTTCCTGTCCAAGATTCCCAGCGTTGTTACAGGTTCTGACATTGTTCAGTGGATGATGAAGAACCTCAACATAGATGATCCTGTGGAGGCCATACACATCGGCAGCCTGATCGCCGCCCAAGGCTACATATTCCCTATCTCTGATCATGTTCTCACTCTCAAGGATGATGGGACGTTATACCGCTTTCAGGCTCCATACTTTTGGCCCTCTAATTGCTGGGAGCCAGAGAACACAGACTACGCCATCTATCTGTGCAAACGGACCATGCAGAACAAGACCCGGCTGGAGCTGGCGGACTATGAGGCGGAGAATCTAGCGAGACTACAGAGGGCTTTTGCAAGAAAGTGGGAGTTCATCTTCATGCAGGCTGAGGCACAGGTCAAGATCGAcaggaaaaaagacaaaacggAGAGAAAGATTCTGGATAGTCAAGAGAGAGCCTTCTGGGATGTTCACCGTCCTGTGCCTGGGTGTGTGAACACCACAGAGATGGACATCAGAAAGTGCCGTCGCCTGAAGAATCCTCAAAGGGTGAAAAAGTCAGTGTATGGAGTAGTGGATGACACACAGACTCAAAGTCCTGTACACACACCCTCCCAGCAGAGCAGCAAGGACACCAGAGAGGACGTAGAgaaagagATTCTGTTCTTGAACACTCAGTTGGATCGGCACTGTATGAAAATGTCCAAAGTCGCTGAGACATTGATGAGCTACACAGAGCAGTATCTTGACTATGACCCCTTTGTGACAGTACCAGACCCGGCTAACCCCTGGATCAGTGACGATGTCACTTTCTGGGAGCTGGAGGCCAGtaAGGACCCAAGTCAACAGCGAGTAAAGAAGTGGGGCTTCTCATTGGACGAGGCTTTAAAGGACCCAGTGGGCCGTGAGCAGTTTCTTAAATTCCTGGAGTCCGAATTCAGCTCCGAGAACCTGCTgTTCTGGTTGGCTGTGCAGGATCTGAAGTGCCGCCCCCTGCAGGAAGTAGCAGCTCGTGCTCAGGAGATCTGGCAAGAGTTTCTTGCTGAGGGAGCTCCCAGTGCCATCAATCTGGACTCGCACAGCTACGAGCGCACCAGCCAGAATCTAAAAGACCCGGGCCGCTACAGCTTTGAAGATGCCCAGGACCACATCTACAAGCTGATGAAGAGTGACAGCTACCCCCGTTTCCTGCGCTCCAATGCTTACCAGGACCTCCTGCTGGCCAGAAAGAAGGGCAAGTCTCTGACAAGTAAACGACTGACAGGCCTCATGCAGTCCTCCTGACGAGTCCTGCAGTTTACAGTTTGTTGGGGTGGAAGGATTGTGGCCATGACGGACCACGCGTATGGACCACCCTCTCTCCAAAACCCACCCGAACACTGCACAGCTACCGACTCTAGATGGCAGCATGCAataagtccaaaaaaaaaaaaaaagaaaatctccaAACGGCCGCAGTGCCGTCTATGTCTATTAAATCAGTGACTAAGAAGACCTCATACATGAATGTCAGATTTATCAGTACCATCTAGAGAACCATTTTACCTTTATTTGGTATCTACAACCAGACTGCAGCAAGGAGGGAACTGTCTCCCTGgattactgttaaaaaaacattcattgtcAGATCCGAAAACAAGGTGTGCTGTAATGTCATCGCAAAGCATTTAGACGAAGTGAGGATGTGTCTCAAATCTTCAGAGCATTCCAAAGGAGTGAAGAACTTGACAAGGGCTTTCAGTGACTGTGTTCCCTCAGTCAAGGTTTGCACAGAACTTTtcgtcattttttttgttggacGGTCACTGAATATCAAGAATGAAAGTAGAAACGAACGGGTCTGGAAAAGCACATTATTACTCCTGCCATTTTGAAGAATCTAGAATTATTTATTCTGTCTACAGGCCGTGTTATTAGCACGCGGTACTTCTAACCGAGACGAGGAAATATTGAAGAGCGATACCTTTTAGACTCAGTTTTATTGAggtaaaatcattttaaaaagtggtaGTATTTCAGGACGGTTCAGAGCACGAAATATTGCTTTTGCACAAAAGGGCGCCAGTGAGGGCCGTTGGCTTCCGGAGATGTTAGCGTGTTTCCTGTACAGCTTTACAGCAAAATGTCCAAACAAGtcacaaaatgaaatgatttaggAGCGTCTATGGGCGCCCATTTTGTCACGTAACAAAAACCCTTTGAGAAGGGTCGATTATGACATAAATTGCAATTATctcattttagatatttaatattaaattaaatgacaaaattatgcgatactaagtcataattattacaaaaacgtcaacttttaatgaaataattatgaCTCTGTGTGTCATAATTGTGATTtaccaaagcatttttttccgTAAGCATCTGATATTACTGTATGTTTAAAACCAACACATCGGTCCTCATAAACTGTTTGTCTTTGCTTTAATGAATGGTATTGTAGCGTAGAACGTAAGCGCATAACGTCGCTTTGTGTCCGTGTTGTGATTAGCATGAGGATGAAAATGATTTGCTCTGAACACACATGGGGATCACAGCCCTTCACTTTCAACATATCAACAGTAGACAGTGTTTGTGGGATTACTGCCCATTAGAAGGTGTTTTTTCATCGAAGGACACCCAGctgcatttctgtattttttgcttGCATCCTGCTCGTTTCCTGAAGCAGCATCACTGCCAGAGACACATAGACCTCTGCTGGGGGAACACACAAATTCTCTCGGTTGTCTTTAGTCCACAAATTTAAAGAGTCAAACGGCAGAACAGAAATGTGTGCTGCTGATCTAGCACGTTTTCTTTACACATTTTCAGGTAGTTGATTTGTCGACTCATAACTGTACATTAGGTTGAAATGGAATGTATAGACTTTGCAGCAATCCTGGATATGGAAAAAGCTGTGTAGAATACAGAACATGGAATATAACTTAGAGGCACAAGTGCCATATTCAGCACAAAACTATGCATGGAATATTTCTAAAGAGTTTTATTGCTTTTaggcttcttcttttttttccattggcAAAAATGAAGATGCAGTAGGTCAAGGAGAAAGGAGGACCTAAAGTCCCGAGACATTCAATAAACATTCAGTTTGGAGAGTTCTGGAACGCTTTTTCGTTTTTCTCTGCATGGATCTGTTAAAGGTTGAATTTAGCAATACACACATAGCTACGGTACATCAGAAAACTGTGCTTCAGTAACGTCGGTGTGGTGGGATTTCATAATCATACTGGACTGAGAAGAGGAGGAAGGAGGAGGTGTCTCTGATCATCTGTTATTGTGTATGTGCTGCTCTCTAGTGGTAAGCATGGCAGGAATCGTGTGAAATCAGCATAGACttggttttacttttttttaattaaaatttacagtacaacaagaataaaaaaaaaaaggcaagaaaaaaaaaagtacaaaacgATTCTTGTGATTGTAAAGGATTAAAAAGTCAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247215.1 lncRNA downstream 2273 14839057 ~ 14843736 (-) True LOC122324712
TU204663 lncRNA downstream 52300 14793495 ~ 14793709 (-) True G138627
TU204596 lncRNA downstream 267108 14578701 ~ 14578901 (-) True G138579
TU204567 lncRNA downstream 320986 14524732 ~ 14525023 (-) True G138562
TU204494 lncRNA downstream 378595 14269723 ~ 14467414 (-) True G138502
TU204880 lncRNA upstream 93648 14997143 ~ 15003189 (-) False max
TU204882 lncRNA upstream 93648 14997143 ~ 15003189 (-) True max
TU204946 lncRNA upstream 420077 15323572 ~ 15324280 (-) True G138812
TU204944 lncRNA upstream 428306 15331801 ~ 15347281 (-) True G138811
TU204970 lncRNA upstream 467113 15370608 ~ 15380969 (-) True G138828
XM_043220443.1 mRNA downstream 32507 14808533 ~ 14813502 (-) True wdr21
XM_043220445.1 mRNA downstream 34201 14808533 ~ 14811808 (-) False wdr21
XM_043220444.1 mRNA downstream 34201 14808533 ~ 14811808 (-) False wdr21
XM_043219751.1 mRNA downstream 46470 14797948 ~ 14799539 (-) True pigh
XM_043219337.1 mRNA downstream 61827 14778676 ~ 14784182 (-) True vps18
XM_043219435.1 mRNA upstream 4404 14907899 ~ 14971290 (-) False sipa1l1
XM_043219433.1 mRNA upstream 4404 14907899 ~ 14971289 (-) False sipa1l1
XM_043219432.1 mRNA upstream 4404 14907899 ~ 14971289 (-) False sipa1l1
XM_043219434.1 mRNA upstream 4404 14907899 ~ 14971288 (-) False sipa1l1
XM_043219431.1 mRNA upstream 4404 14907899 ~ 14971288 (-) False sipa1l1
TU204531 other downstream 400165 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1154002 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 1409658 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 2598999 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 2621739 12222810 ~ 12224270 (-) True G137949
TU204892 other upstream 89604 14993099 ~ 15015183 (-) True srsf5b
TU204893 other upstream 89604 14993099 ~ 15015183 (-) False srsf5b
XR_006247368.1 other upstream 386780 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 818551 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 819055 15722550 ~ 15722769 (-) True LOC122325623

Expression Profile