RNA id: XM_043219347.1


Basic Information

Item Value
RNA id XM_043219347.1
length 3173
RNA type mRNA
GC content 0.43
exon number 2
gene id gja11
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23824931 ~ 23829080 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatagttgttttaTGATTgatgatgacatttttatttactactgCTTTTTCTTTAACCCATtctttatgcacttttcatatatttagaaaaaggttttgtaaatgaattatttatttttgatttttagtaTACCGTAGATATGCATTGCATCATTGTATCGCCAGCGTTCGGTTACTGCAGTGTATCTCATTTAGTTGTTGCAACTATTATCAATAAAAAGCACTAATGTttatacaatactttttttttttttatttaaagattctGATATAGTCCTAGTTAACtgacatgcattttaatactgCGTGAAAGCGTTTGATTTATAGCGGcgtttaattgttttgtaatagGTCAAATCGACgttgctaaattattttatgatcGATAAAAGGTCCAAGATTTCTGTGTGTCGTCAGCAAGGCTGGAGTTTATACAGTCCGTTTGCCCCAGTAATGCTGACGGCAAGTATTATCTTTAAAGTGTAGATAAAGTCAAATGTTGTGTCTCTGCTGCCAAGAACAAATAATGCACTTTAACATAAGTAACGCTTTATTGTTGTTCCGCTACGAGTGGACATACTAGTTGAATGAAACGTCTCGGAGGACCACAGTGCTACATTATTCAACATAAATATGTTGTTGTCTAAGTATACATATACTATAACAGTTGACTATGCATACACAAAATGACAAACTGTACTAGTGCTTCACATAAATATTGTGCAGTTAACACTTGCGCTATCTTTTGAAGTGTTTGTAAAAGTGTCTGGCGCATATAAAGAGCCGCTCTCTGCACTATAAATACGGTCATCGAGGAGTCTTTGTGCAGTGTTTGCTGCCTTTCAGAGTCTCATTTCACGGATCTGAGGGTTACAGCCCTCCTGGCTGGCTGCTGCCATGCCCACAAGTGTATGCCAGCCATGCTCTTTAAACTCTGGGCATCTCTCACCGAACCACGGGCCAATAGATTTTCTGGTGCATATAAAGTGCGTTACCACAGATGGTTTTTCCAGCCCACTCACCTGTGTGCAGTTCACTCAGAAAGGTTTCTTTTTGAAAAGGGTTCTTTTTTGACGGGTTTTTATGTGGTGCATGGTTAGGGGTGGGGGGATTAGATGTTGCTGAGGTAAGGTTGCGGTGGATGTGGTTTCAGAAGGTGATTGCAGTTGAGGGCTCTCACAGCCTTGGGGGAATAAGCTGAGAGAGGTAGCGTCTACCTGATGACAGAGCTGGAAGAGATTgtgggatggatggatggggtCGCTATGCAATGAAAGGTTAACCTAGCGTTAACCTTTAGCGTGAATAGGATGTTTCTTCAGCGATGGATCCTTCAGGAAAGAGTCGAAACTGAAGTACAGTgtggagaataaaattattttcaatttaaaatttaaaaatcactttttgggGGGCAGGACGGACTGGCAAGCAACGGAGTATGCTTAGGAAACAATTTTGAGAACGAATATAGATGTGACGTACAGTGTGCAAAACCAGAGCGTTTATATAGTGCATGTCATATAAACCCATTCGAACATATTCGCACTAAATCTTCCGCTTCCAGATGTCaaggctggaaaaaaaaaacggtttgaGAACACACACTGATAATGTCataatctttgttttgttaCAGAAGTTGCCTCTTCAATATGAAGAGGAAGGTTAGAGGAAACCTGTTATACACATGTCCCTGGATCCCTCACTGAGCGGGTGAAACTTCAGCTCCGACTTCTTAAACTTGgaTTTCGATTAACTTTCAAAATGGGAGATTGGGATTTTCTCGGAAGACTGCTGGATAGAGTCCAGGCGCACTCAACGGTGGTGGGAAAAATCTGGCTCACCGTCCTGTTTGTGTTTCGGATTCTAGTCCTCGGCGCCGGTGCCGAAAGAGTGTGGGGCGACGAGCAGTCGGACTTCATCTGCAACTCGGAGCAGCCCGGGTGCGAGAACGTCTGCTACGACCAGGCGTTCCCCATCTCGCACGTGCGCTTCTGGGTGCTGCAGATCATCTCGGTGTCGACGCCTACTCTGGCCTACCTGGGCCACGTCGTCCACGTCATCCATGTCGaaaagaaagtgagagaaatGATGAAGAAAGAGCTCCAGAATGAGCAAATCAGTCTGTTCCTGAAGAAAGTCTACAAACTCCCCAAGTACAGCAGGGACAATGGGAAGGTCAACCTTCGGGGGCGTCTCTTGAGAAGCTACATTCTGAGTTTGCTTTGCAAGATACTTTTAGAGGTGGGTTTCATCTTAGGACAGTACTACCTTTATGGCTTCACTCTCGAGGCCCAGTACGTCTGTGCCCGCTTTCCGTGTCCTCACAAGGTGGACTGTTTCTTGTCGAGGCCTACCGAGAAAAGCATCTTCATTTGGTTCATGCTGGTGGTGGCCTGCGTCTCCCTGCTCTTAAACGTGGTTGAGATCTTTTATCTTTCTGTTAAGAAGATCAACGAGTGTCTCAGTCGCAAAAAGGACTACACCATCACTCCCGTGACCCCCGTCGCGAGCAGGAAGGACTTCAAAACTACAGATCAGGTGATTCAGAACTGGATGAACCGTGAGGCGGAGCTTCAGAAGAGGGAACTTGGCAATGAGGCAACCAAGAGCGTGGCTTCAGAAAACCACAGCGTTGACATGCAAGAGATCCATATCTGATCAGCGGGGCTCTGTACACAAAGGCTTTCGCACGATCGACTCGAGCAAACAGCCACTGAACCAAGAGACTCGTGCACGGTCGAGACCCCCCGACTTCAAGCGCGCCGTggctctctctctgtttaacGAATCGATAATGTATCGCTGAAAACTcttatctgtttttgtttgttcgtttttctCATTTAAGTCTGAAACTGGGCTCAGGTTCAGCAGAAGTAAAGCTTCAAACTGTGTCATGGAAAGTGTGTTTTGGATTTTTCTTCGTTCTCTATTTTAGCGTACCTTCAAAGACAATGAATATTTAGTAGCCCTTACTACagtcagaaatcattctaatacgccgATTACTGTCAATGTCGaaaacagcttaatatttttctggattcatatttttaatgatatgaTAAACAGAAAGCATTACTTGAAatgtaacatataatataatgccTTTACTTCAATGCATGGTTCAATGCATCCTCGtggaataaaagcatt

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208758 lncRNA upstream 42211 23782508 ~ 23782720 (+) True G141439
TU208755 lncRNA upstream 53505 23771095 ~ 23771426 (+) True G141436
TU208716 lncRNA upstream 253477 23571095 ~ 23571454 (+) True G141403
TU208424 lncRNA upstream 416107 23403021 ~ 23408824 (+) False G141216
TU208797 lncRNA downstream 118536 23947616 ~ 23948827 (+) True G141464
TU208798 lncRNA downstream 120181 23949261 ~ 24007460 (+) True G141465
TU208802 lncRNA downstream 125814 23954894 ~ 23966589 (+) True G141469
TU208799 lncRNA downstream 175607 24004687 ~ 24086637 (+) True G141466
XR_006247175.1 lncRNA downstream 193054 24022134 ~ 24032657 (+) True LOC122324430
XM_043219346.1 mRNA upstream 52 23823100 ~ 23824879 (+) True hsdl1
XM_043220398.1 mRNA upstream 473276 23343715 ~ 23351655 (+) False pln
XM_043220399.1 mRNA upstream 473276 23343715 ~ 23351655 (+) False pln
XM_043220394.1 mRNA upstream 504115 23312199 ~ 23320816 (+) True si:dkeyp-114g9.1
XM_043220395.1 mRNA upstream 513465 23232384 ~ 23311466 (+) True slc35f1
XM_043219348.1 mRNA downstream 152 23829232 ~ 23831383 (+) True gja13.2
XM_043219350.1 mRNA downstream 3238 23832318 ~ 23835853 (+) True gja12.1
XM_043219349.1 mRNA downstream 11692 23840772 ~ 23843490 (+) True gja13.1
XM_043219344.1 mRNA downstream 15007 23844087 ~ 23847503 (+) True gja1b
XM_043219345.1 mRNA downstream 15042 23844122 ~ 23847503 (+) False gja1b
unassigned_transcript_2513 other upstream 724643 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 1307256 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 1348157 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 1980230 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 2626312 21168775 ~ 21198619 (+) False ipo13b
TU208810 other downstream 243791 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 243791 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 243791 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 611163 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 1139800 24968880 ~ 24992667 (+) False LOC122325234

Expression Profile