RNA id: XM_043219349.1


Basic Information

Item Value
RNA id XM_043219349.1
length 1974
RNA type mRNA
GC content 0.45
exon number 4
gene id gja13.1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23840772 ~ 23843490 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCAAAAGTGTGAACATGTTGTTGAATTGTATTGATTTAGCAGaaactttcttcttttcttctctatTTTGAGCACAGTGCCACTGAAAACATGGTTGGTTACGTGTCTTCTGGAGGTCACAGTCCCTGTTCCTCATGGGGCCACGCCGCAGCTCCATCACGTACATCTCCTGCTTCCACTTAGCAGCATAAACATAGCCGATGATCTGAATTTCGCGATGGGCGGAGCGTTCGGGGTCCCCTCAGATATAGGTAAACCACGTTTTACGGGGAGAAGATGATCGATCGAAACCATCGAGCCTCATCCAGTCCGTGACCTAACCCGAAACCGGCAAGATATTTCGCGTTTTACCAACACAGAGGTTTTGTTTGAGAACTGACCTGACATTTCAGGAAGCCGAATAAGgaaatatgttcatttaaatacacgATTAggaataatgttaaaataatatttaggatCGCTGGTAGTTACAGTTTGGATCTATTTGTTCAGGGCGTCGACCAACACTCCCGAGCGTTTCTTCCTCCGTGATATTATTCGGGAAGCCCTAAGCCACTGAGTGACCAATCATGGGAGACTGGGGATTCCTCTCAGCTTTACTAGACAAAGTCCAGTCCCACTCCACCGTCATCGGGAAGATATGGATGAGCGTCCTCTTCATCTTCAGGATCCTGGTGTTAGGAGCAGGAGCGGAGAGCGTGTGGGGCGACGAGCGCTCCAACTTAGTATGCAACACCAACACGCCGGGCTGCGAGAACGTGTGCTACGACTGGAAGTTCCCCATCTCTCACATTCGCTTCTGGGTCATGCAGATCATCTTCGTCTCCACCCCGACCCTGGTCTACCTGGGCCACGTGGTGCACGTCATCCACCGCGAGAACAAACTGAGAGAGGAGCAGAAAAGAAACCCGGCGTCCAAGTCCCCGAAGTACACCGACGAAAAAGGCAAGGTCGAAATCAAAGGGACCATGCTGGGCAGTTACCTGACCCAGCTGttcattaaaatagttttcgAGGTGGCTTTCATCGTCGGACAGTATTACCTGTTCGGATTCTTCATGGAGCGCAAGTTCCACTGCGAGCGGCTGCCCTGCACGGTGGTGACCGAGTGTTTCGTGTCGAGGCCCACGGAGAAGACCATCTTCATTATCTTCATGCTGGCGGTGGCGTGCGTGTCTCTGGGCTTGAATGTTCTAGAGATCTTCTATCTGCTTTGCAAGAGGATGAGCGGGAGGAATAAGAGGTGTAAGAACGCGACGTATCCTGGCGATTCCCGTTATCCCTCGCCTTTCACCGTAGAGCTCGATTCCGCTCACGGTACGAGACACAACGAGCTAAACAGGGCCTTTCAGAACAGGTGGGATCAAAGCAAGGGCGGCCTGGACGGAGCCAGACCCGAGCCGTAGAGCAATAAGCCAATGCAcgtaaaaaatacattcatctTCTTATAATCACGTACCACAGATCATGGTGGCTAAAGTAACGCTAGATGGCGCTGTGATCTTCCACGAGTTGCACTCACTAACCCCTAACTTGTCACTACAAGgccagtgatttttttttattttttctccccGACTTACTGtagtatttatattcttttttttttgtatgttgttttcGCAGCGTGACGCGAAACATGTTTAACCGACTTTTTCTGtttgtgcaataataataaaccgtGTAAGGCAGAtaagtgaatgaaaatgttttcttatgCAGAAGTGACTTCGGGAACAAAGTTCATCAATTAGCCTGTTAAAACACAAGTGATGTCTTTATGGACTTTATGGAAAAACACTATCGTAATATACATTCTACATACTTCATTTAAATCTACGAAATGATTGTATTAGTTCACACatgattttataatatttataaatatttttataatatttaacaatataagtgcgtatatatatatatatatatatacatcataagttaataagtaaattaaaatgt

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208758 lncRNA upstream 58052 23782508 ~ 23782720 (+) True G141439
TU208755 lncRNA upstream 69346 23771095 ~ 23771426 (+) True G141436
TU208716 lncRNA upstream 269318 23571095 ~ 23571454 (+) True G141403
TU208424 lncRNA upstream 431948 23403021 ~ 23408824 (+) False G141216
TU208797 lncRNA downstream 104126 23947616 ~ 23948827 (+) True G141464
TU208798 lncRNA downstream 105771 23949261 ~ 24007460 (+) True G141465
TU208802 lncRNA downstream 111404 23954894 ~ 23966589 (+) True G141469
TU208799 lncRNA downstream 161197 24004687 ~ 24086637 (+) True G141466
XR_006247175.1 lncRNA downstream 178644 24022134 ~ 24032657 (+) True LOC122324430
XM_043219350.1 mRNA upstream 4919 23832318 ~ 23835853 (+) True gja12.1
XM_043219348.1 mRNA upstream 9389 23829232 ~ 23831383 (+) True gja13.2
XM_043219347.1 mRNA upstream 11692 23824931 ~ 23829080 (+) True gja11
XM_043219346.1 mRNA upstream 15893 23823100 ~ 23824879 (+) True hsdl1
XM_043220398.1 mRNA upstream 489117 23343715 ~ 23351655 (+) False pln
XM_043219344.1 mRNA downstream 597 23844087 ~ 23847503 (+) True gja1b
XM_043219345.1 mRNA downstream 632 23844122 ~ 23847503 (+) False gja1b
XM_043219232.1 mRNA downstream 97174 23940664 ~ 23945954 (+) True hsf2
XM_043218624.1 mRNA downstream 127590 23971080 ~ 24004048 (+) True slc24a4b
XM_043218630.1 mRNA downstream 278367 24121857 ~ 24348875 (+) True fut8b
unassigned_transcript_2513 other upstream 740484 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 1323097 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 1363998 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 1996071 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 2642153 21168775 ~ 21198619 (+) False ipo13b
TU208810 other downstream 229381 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 229381 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 229381 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 596753 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 1125390 24968880 ~ 24992667 (+) False LOC122325234

Expression Profile