RNA id: XR_006247217.1


Basic Information

Item Value
RNA id XR_006247217.1
length 2554
RNA type transcript
GC content 0.44
exon number 19
gene id zpax2
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5924066 ~ 5931122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTAGCTGGGCGGAGAGTCCCGTCCTGTAAAGCTGTTTGAGTTCCTCACGTGCGCGCAATACTGTGCAATCAGACGCGACGCGCACGAGACTGCTGAGGTCGAGCGCGCGATATCAAAGATTTCAAATAATGGCATACTTTGGAATATGGGCTTTATGGCTTATGGTCACTATAATAAGCATTCATGCAGACGCCTCTGCAGAAGGAATCCAAGCTGAATGTCTTGGAAATAGGGTACAGTTTATCCTCCCTGGTTCTTTGAGTGCAGGAAGTCCTTTAGAGCTTTATGCAGTCAATGACACACAGACAGTCCTTCTCACACCTCACCTGGCGGCTCAATGCGGCTATACACAGAAATCTGATCCTTGGGGGAATACGATAGTATCAGCTTCCCTACAGAGTTGTTATACAGAGACCAAGGATGACAAGGAATTTAGAGTAGCCATGCAGTTTAAACCGTATGAATTGGCCACAGAATCTAAGAAAGTCCATGAAGTCTTCAAGTTCTGTCGTCACACCATGACTTCACGTGAGATTTTGTGCGAGACAAACTTCATGGAGGTATCCGTAAGAAATGCGATACCAGAAATCCAGACAGCACCGGTACAACAGCTGCCCACAGTTATACCTAACTTGCAACTCTGGAAAATCCTACTGTACACGCCTGAAGAGAAGTCTTTTGATAAAGAGACCCTACATGCGATGGGCTACAATATTCAGAATTCTCCAACACGACTAGTCATGCGAACACCATACAACATGGTCAAAACCTTTGTCCAAAAGGTTGACGGTGTTGATATGGTGGTGTTTAAATCAATGGTCTTGTTTCGTGACCGCTGGATGATGACTATAGTCGAGTCGGCAGCCGCCTGTCCAATCAATGGAGCTTCAGTTATCGGTCAAATGATTTATTGGAAAGTTCCTCTGCTCATAACTCCTGTGGTGTCTTTGCAAGTTGAAATCTTGGAGGTGCACATGGGTGTCAATGGACGAAGGCTCACACCTGAAGAGATGGAGAGCCGTAACTATGCCGTGACCTTCAAAGAGTCCCATGTAGTTGTTACGATTCCTATTGGGGCTGCGGATGGATACTACAAGAGTCACATTCTTGAGAACCAGTACCATATCAGTTACACCATAGAACCCATGCTTGAGCTGCTGTGGAAGGAGGGCCAGGATAAGACCACGTATAAGGTCTTGTTCCCCATCACCACCCCTCTGACACCATGGCCACCCCAAGTTACACACTCCACACAACTGGAGCAGAAGGTGTTTGATGTAATGTTGGGTTACTTCCTACCTGATGTGGAGCTGCTGAATATCACCTTTGGCTCTGAATTGCTTGTGGTCTCAGATATAATTATTAAAGGCATTTACCTGCAAGAGCATAGCTTTCTGAATGACACCAAAGCCTTTGCTCTCCGGGTTCCCTTCTCTGAACCTTATGTCcaaataaagACACTTCGCCCTGATGTAAGAACCTACGTACTTGATTTGGTCTTTGGTTTCGTCATCTTGCCTGAACATACAGCATTTTCACACTCTGTTGTAGTAGAAGCATCTTCCGCTGAAGTTGTCATTCCACAAGTAGAGGGAAGTTGCAATGAGGACAGCTTTAGCATTTATGTCAAATATGGGAGCACCCAGAGTTCCAACATAAAGATCCATCTGGGACATTTGGAGCTGAATAATATGATGTTGCAGCACTATGAACATCACTCAAACGAAACCCATTTTGAAATCGTTGTGCCATTACTAGATCCAGTTGTGGTTTTTGAGtccGTTCAGATGGCTGGAATCATGGGAAGAATTGATGTGGAAATTTACGATTCTTTGAATAACTGGGCTATAAGAAACTTCTCTCTTGCCTGCCccttttttgtaatattgtcaGAGTGTTTTCCTAATGGAACAATGACTGTGGTGTTTCCCAAACTGGATTTGATGCCAAATCTTATTCCTGGTGAACTCACTCTGAGAGACCCGTCCTGCAAACCCACCTATAGTCAAGACTACTATGCTTATTTTAACTTTGGTGTTACCACTTGTGGAACCACGCGAAAGTTTGTTAAAGATACCATGATATACGAGAATGAAGTCACATGGAAGAGAGATGTACTTTTGCCAGAGACTGCACTCACGGAGCAGGATTACAGGTTTACGGTATCCTGCGTTTATATCGCAAACGCCACCCAAAGCATGATCTTTCATGCTGTTTCGCACTTTAAACAGCCGTACGCAGATGTCGAGAAGGGTGATCACAAAGTCAGCATGAGGCTTTCTAAGGATGTGCCAATCCTAAAGACCCTGAACAGACCATGTTCCATCCTGTAAACACAGATGACAGAGTGGAAATCCCAGATCACTTCAAAAGATTTGAAGTTAAAACATTTGCTTTCAAAGAGACTGATGAGAGTTCTAAAAGTGAAGCTGACACCTTGGCCAGTAGGGTTTTTGTCCATTGTGAAGTCATTATTTGTCATGTTGAGGATAGACATTGCTACAAAGAGTGTCCGACAGTTCAGAATCCGGATGGAAGAAGTTCAAAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201429 lncRNA downstream 63852 5859953 ~ 5860623 (-) True G136368
TU201394 lncRNA downstream 223000 5701181 ~ 5701475 (-) True G136356
TU201376 lncRNA downstream 271550 5652299 ~ 5652925 (-) True G136350
TU201152 lncRNA downstream 804709 5112173 ~ 5119766 (-) True G136188
TU201141 lncRNA downstream 827414 5091300 ~ 5097061 (-) True G136180
TU201458 lncRNA upstream 117846 6048968 ~ 6050633 (-) True G136388
TU201487 lncRNA upstream 197376 6128498 ~ 6145661 (-) True G136398
TU201506 lncRNA upstream 273968 6205090 ~ 6205438 (-) True G136416
TU201549 lncRNA upstream 315141 6246263 ~ 6246891 (-) True G136440
TU201576 lncRNA upstream 343632 6274754 ~ 6278064 (-) False G136460
XM_043219149.1 mRNA downstream 20240 5893432 ~ 5904235 (-) True rhag
XM_043219152.1 mRNA downstream 31184 5889481 ~ 5893291 (-) False si:ch211-22i13.2
XM_043219151.1 mRNA downstream 31184 5889481 ~ 5893291 (-) True si:ch211-22i13.2
XM_043219523.1 mRNA downstream 227581 5689383 ~ 5696894 (-) True LOC122324836
XM_043219395.1 mRNA downstream 277568 5624200 ~ 5646907 (-) True LOC122324749
XM_043219357.1 mRNA upstream 3375 5934497 ~ 6031008 (-) True LOC122324731
XM_043219360.1 mRNA upstream 3375 5934497 ~ 6031008 (-) False LOC122324731
XM_043219359.1 mRNA upstream 3375 5934497 ~ 6031007 (-) False LOC122324731
XM_043220368.1 mRNA upstream 112242 6043364 ~ 6046192 (-) True grcc10
XM_043220369.1 mRNA upstream 112242 6043364 ~ 6046158 (-) False grcc10
unassigned_transcript_2505 other downstream 97744 5826620 ~ 5826731 (-) True trnal-caa_53
unassigned_transcript_2504 other downstream 98252 5826112 ~ 5826223 (-) True trnal-caa_52
unassigned_transcript_2503 other downstream 98760 5825604 ~ 5825715 (-) True trnal-caa_51
unassigned_transcript_2502 other downstream 99776 5824588 ~ 5824699 (-) True trnal-caa_50
unassigned_transcript_2501 other downstream 100284 5824080 ~ 5824191 (-) True trnal-caa_49
TU201577 other upstream 343632 6274754 ~ 6302976 (-) True G136460
TU201658 other upstream 481357 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201662 other upstream 501708 6432830 ~ 6451499 (-) False LOC122324366
TU201897 other upstream 1194626 7125748 ~ 7228963 (-) True G136688
TU201939 other upstream 1365739 7296861 ~ 7305724 (-) True G136707

Expression Profile