RNA id: XM_043219379.1


Basic Information

Item Value
RNA id XM_043219379.1
length 4724
RNA type mRNA
GC content 0.49
exon number 4
gene id lrfn2b
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1169796 ~ 1223016 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTGTTGTGTTTTACCGATGCTGGAGAAGGTCTTCTGGAGCTGCTGGGAGGTTTGGATGACTGTAGATGAGCAGAGAGCCTGATCTTCAGCTGTCGGACTGGATTCAAGCCTGTGTTTAAAGATTCGACGGGGAAAAACCTTCACgtgtgtgtgtggaccgGAGGATGCTGGGACGTGACTGATGAGCTGAACCTATGGCAGACGCAGGTCCCTTAGTGTGAATCTACCATGGACCCCGTGCTCTGTCAGATGCTGGTTCTGGGAATGGCTGTAATGATGGCCCGAGCATGCCCCAAGTACTGCGCGTGCCAGAACCTCTCTGAGTCACTGGGGACCCTGTGCCCGGCCAAAGGCCTGCTCTTCGTGCCACCTGACATAGAtcgcagcaccgtggagctccGCTTGGGGGGAAACTACATCCTTCGAATCACACAACAGGACTTTGCCAACATGACAGACTTGGTGGACCTTACGCTGTCCCGCAACACGATAAGCTACATCCAGCCATTTTCCTTCGGGGACCTGGAGACCCTCCGTTCTCTTCATATGGACAACAACCGTTTAGTGGAGTTGGGCCCGAATGACCTGAGAGGGCTGGTCAGCCTGCAGCATCTCATTCTCAATAACAACCAGCTGGGTCGCATCTCAGAGAAGGCATTTGAAGACTTGGCGCCGTCACTTGAGGATCTAGACTTGTCCTACAACAACCTTCAGGCTCTTCCCTGGCATTCAGTCCGGCAGATGATCAACCTGCACCAGCTGAGTCTGGACCACAATCTGCTGGACTACATTCCCGAGGGCACCTTTGTGGATCTGGAGAGGCTGGCCCGTTTGGACTTGACCTCCAATCGGCTTCAGAAGCTTCCGCCGGATCCCATCTTTGCCCGAGCACAGGATTCCGAGGCGATAACCACACCATTCGCACCTCAGCTCTCACTCAGCATAGGAGGAAACCCGCTTCACTGCAACTGCGAGTTGCTCTGGTTCCGGCGCCTGGAGCGAGATGATGACCTGGAGACTTGTGCCTCACCTCCCGGCCTGAAGGGCCGCTACTTCTGGAACATTCGAGAGGACGAGTTTTTGTGTGAACAGCCTCTGATTACTCAGCACACCCACCGCATGCTGGTTCTGGAGGGGCAGACAGCCAGTCTACGGTGCGAAGCCATAGGAGATCCCACCCCAACCATACACTGGGTGACCCCCGATGACCGACTTCTCGGGAACTCCTCTCGCACTGTGGTGTACCGCAATGGGACCCTGGAGATCCTGATCACCACTTCCAAGGATTACGGGACCTTCACTTGCATTGCAGCCAACCTGGCCGGTGAATCAACCGCTTCGGTGGAGCTGTCAATTATCCAGCTGCCCCACATAAGCAACGGCACAGGCCAGGCATCGCAACCCAAGTCCCGCCTGTCGGACATTACCGGCAGCTCCAGGACCAGTAAAGGCACTTCCAAAGGCCAGCAAGAGAAAGCAGTGTCTGTGTCTGAGGTGACCGCCGTGTCTGCCTTGGTCAGTTGGTCCGTCAGCAAGACTGCTCCCAAAGTCAAGATGTACCAACTACAGTACAACTGCTCAGATGATGAAGTGCTCATATACAGgatGATTTCTCCTTCCAGTAAGGCCTTCCACGTCACCAACCTGGTCTCAGGGACTCTGTATGACCTGTGTGTGCTGGCGGCCTGGGACGACTCCGCCACGACCCTGACTGCCACTAACGTGGTGGGCTGTGTGCAGTTCTACACCCGGGATGAGTACCCGCAGTGCCAGTCTCTGCACGGCCAGCTGCTGGGAGGCACCATGATCCTGGTGGTGGGCGGCGTTATCGTGGCCACGCTGCTGGTGTTCATCGTCATCCTCATGGTGCGCTACAAGACAGGGGACGGCCAGACCCCCAGCAGCAAGCTGAGTGGCGTCAGTGAGACGTACTCGCAGACCAACGGAGGGAGGCCGGGGCAGAACGGACTGCCTCTGCTGGCGCCCAAGCCCAAGGTCGGCACGCAGGACGAAGCAGTCGAATTCAAGTGCGGTTCCCTCCAAAGCAGCttgtcctcttcctcctccactTCCTCCTCGGGCTCCCACAATCCCCCGTCCTACAGCCCCAACAGTGCCCTCGCCAGCATCTGGAGGTCCACGCCTCCCAAGCCCCGCAACAACTTAGACCAGCTTCTAGGGGCCTTCACGTCGCTGGAGCTCCGGGGCCAGGCCAAGGAGCCGCGAGCGCCCGGCGGTTCTGCGAGCACGGCTGCCGCTTCAGCCCCAGCGGGCCCCACTGACAAGGAGCCTCTGTTGGGCCGGACGCTGGACTCGAGGCTCAGCAAGCTGCTCATGCTGCCTCTGGACTCCAAACCCAAGAGGAGCCACTCATTCGACATGGGCGACTTCACGGTGTCCACGGCGCAGCAGCTGTGCTCGTACCCGCGCCGCATCAGCAGCATCTGGACCAAGCGCAGCCTGTCGGTGAACGGCACGCTGCTGCAGTGCGACGAGGACGGGGACAGTGCTGGGAGCAAAGGCACCCTTGAGAGCTCTGAGTGGGTGATGGAGAGTACTGTTTAGGGACAATATAACCTCATCATGCATGACtctgaatatgttttttattattgctattcGCCTTGCCATATCCAGAACAGACGCAGCATTCAGGGGGTGAATTCACGGAATGGTCGCACCACGCTAGCTTCactatttcagcaaaaaaaccTGTCAAACCTTTCTATTGGACCTCAGTTTGTCACACGAACATGCCCAATTTCTAAGTAGAGTAGACTCATTGTAGCTTGtgctttaaaatagaatttttttatgcatacattGTAACCACGCTAACTTTGAATACACATCTATATTGGATTAGTTTCGCAGCAATCAGTTATTCCACAAGAGACAGAACAAAGGTTTTGCAGCAACAAGAgatataaaagtgttataaaatattaattatcagCCATAACTTTTCCGGCGTCTGCTCGAAAGACCGAACTGACACTGGGCATGGATGAATATAGACCGTCCCGGTCCTTCAGTTTCCCTTTctgaatgatatatatattcagtgctTGCTGCTGGTTATTTCCTCTCAGGCAGACACACACCTGCTGGTTGGTCACTTGTTTTTTGCAGGGATGCTTCCGATACCTGGGATTCAGTATTGGCCGATACCAAGAACCGATCTGAtactaaagtaaaatttaaaaaagtgctgAATTACCTAATAAACCGTATGCATCCCTGTGACTAACCGTGTTCCATACACAACAATGCTAGGCACAGATGACGTTTTTAGGTTGGAAATGGtcgttttttaaatgttgattgtGGCTCTCTCACCTGAGACAGACAACATAGACAGTGATGATctattcattttagtattttagcattttaaacgGTCATTCTTTAACAAACTAAACATTAACTATAACGCTGTTATTTCAAAGccaactattcatttaaaaacgttAGGTTGTCTGTCCTCATAAAAGCACACAATGTAAATAGTGCACACAGGAAATGAATGTTAACTTCTAGTTATGGTACTTTGTAATCAGTTTAATGTCAAATGTAAATAGGCTAATTGTAAATGCTAAATTGTAAATTAAGTGGTTATTAAGCTGATTTGAGCCATCAGTCATACAAAAGAATGAATATCATACCTTCAAGCAAATCCTTTCCCAGTTATGTGATTTATTGGTACCGTACTTTTATTTCACGTGTTGCTCGTAGATTCAGAGCTTCTTAAGTATAAACGCCTCGTCCATTTGGAGCCAGGCGAAATATAAACAAGGCTTTAGTGCAGTGATATACAGCACGGTAACATCTGGCACGACAGGATGGTTAGCTTTTCTGAGGTGAGACActttttattacataacaaatgacccaaataaaaactgaataatgACACTGACATTAAGCCTAAGATTCAGATACTGAATCGGGAAagcgctctttttttttcaggcatcTGTCAGAAGTGCCAATAGCATTCatgcatgtctttttaaaataaacgtcGCCTAGCAATTGTAAGTCAGATCGGGACAATTGTCACGATACCCAACCTAGAAATGTATCGGATCAAAGCATCCCTAGCTCTTTCTTGTTGGTTTGGTGTGTCACGGCCTTTACATGATCTGCACAAATCCTGAAGCTGTGCAGAAGAGACGTCGGTGGTCGTGATTCATTCAGCGAATCCCCCCAGGCTGCTGTGCTGACtcattggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatcttcATGTTGTATTTGTGTCTGAATCGGACAGGTTGGCATGAATGGGGGATAAACTCTTGCGCTTATGCGGATTTTCAAAGCTGGTACAGAAATTGAGGAAACTGTAGCAAACGGCCATGCCAGCAGTTTCCCTGAGCTGCGTAAAGACTCTGAATATCTTCATCTGCAACACTGTTTATATGTGTAATGAATCAAAAaatttatatcttttatatctTGTTGGTCAAATGCTCCTCTTTCTTGATGAAAGAGAATTCCTGAACCTTCACGGCATTTATCTCACTCCCTTCAACTTCTCGTTTACTCACTTTTGAGAAATCATGTGTACGGTTTCAATGAATTCTCAGATATTGGAAGCCGTCTGTTTACGTGTGATGTTTTTCTATATTCCTGTATTTACTAAGGTGATGGAAAGACGTGAGACAATAATGAAGATATCTTGAAACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199793 lncRNA downstream 39720 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 62692 1106777 ~ 1107104 (-) True G135277
TU199795 lncRNA downstream 99907 1007146 ~ 1069889 (-) False G135226
TU199887 lncRNA upstream 15425 1237960 ~ 1238160 (-) True G135297
TU199918 lncRNA upstream 64557 1287092 ~ 1287309 (-) True G135323
TU199938 lncRNA upstream 191268 1413803 ~ 1422222 (-) True G135339
TU199988 lncRNA upstream 330576 1553111 ~ 1555177 (-) True G135365
TU199993 lncRNA upstream 332733 1555268 ~ 1557577 (-) True G135368
XM_043218775.1 mRNA downstream 5064 1162676 ~ 1164732 (-) True zgc:112001
XM_043218737.1 mRNA downstream 9415 1154064 ~ 1160381 (-) True LOC122324370
XM_043220162.1 mRNA downstream 22946 1140650 ~ 1146850 (-) True LOC122325202
XM_043218721.1 mRNA downstream 82216 1081075 ~ 1087580 (-) True slc35a1
XM_043219375.1 mRNA downstream 111749 1051271 ~ 1058047 (-) False LOC122324736
XM_043219148.1 mRNA upstream 70683 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA upstream 70683 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA upstream 70683 1293218 ~ 1311655 (-) True tab2
XM_043218923.1 mRNA upstream 336245 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA upstream 336245 1558780 ~ 1571698 (-) False pcmt
TU199865 other downstream 58935 1110425 ~ 1110861 (-) True G135279
TU199860 other downstream 63978 1103306 ~ 1105818 (-) True G135275
TU199861 other downstream 66683 1102705 ~ 1103113 (-) True G135276
TU199811 other downstream 204401 939173 ~ 965395 (-) False G135237
TU199808 other downstream 229621 939173 ~ 940175 (-) False G135237
unassigned_transcript_2213 other upstream 230563 1453098 ~ 1453168 (-) True trnag-ucc_6
XR_006247319.1 other upstream 231095 1453630 ~ 1453745 (-) True LOC122325578
unassigned_transcript_2215 other upstream 232799 1455334 ~ 1455405 (-) True trnag-ucc_7
XR_006247320.1 other upstream 233328 1455863 ~ 1455978 (-) True LOC122325579
unassigned_transcript_2216 other upstream 234319 1456854 ~ 1456925 (-) True trnag-ucc_8

Expression Profile